Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01063 ATGTCTCCGAACACGCTCCTCTTGTTCTTCTTCTTCTTCTTCTTCTTCCTATTACCAACAACACTCTCATCACAAAACACAACCTTCATCTTCCCTTCATTCACTCTCCGCAACATAACACTCCTCGGCGACTCCTTCCTCCGTCACGGCATCGTCGGTCTAACTCGCTCCACCGCCGTCCCTGCTTCCAGCTCCGGCACTCTCCTTTACAACAACCCCATTTCTCATATACCCAATTCATCTTTCTCTTTCTCAACCAATTTCACTTTCTCTATCACTAACACAAATCCTAACCCTCCTTCTTCTTCTCTCAATGGCTTCTCCTTTTTCATCAACTCCACAAACTCTTTCATTTCCCTCAATTTTCACACTAACAATAATAACCAAATTGATTTTCATTTCAACAATACTTCAATCCAAAAAACCATTGATTTCAATTTCACAAATGGAAACTTGATAACTACTTGGATCGACTATAAGGGTCCGTTTGATGGTCAGTATAAGAGACAGAGTAATTTGAGTGTTTACTTAAGCTATGAAAATTCGAGTTTTTCGAAACCCGAAAACCCGGTTTTGAGTTTCGATGTTGATCTTTCTGAGTATTTTAAGGAGATTGAGCTTCTATATGTTGGGTTTTCGGGTTCTGCTGAAGGAAGTACTGAGCTTCAACAGATCATGAATTGGAGCTTTGAATCTTTTCAGTTTCTAGTTATTAATCAAACTCAAAATAAAAATTCAACCTTTCATCATGTAGGTTATCAATATGAAGATATCCCAGCTTCAAATGCAACAAGAAAAAGTCATGGAAAGAGATTCATGATTGGTTTTTGTCTTGCTATTGTGGGTCCTGCTTTTTTCTTTGTTCTGCTATTGGTTTTAGGGTATGTTTCTTTTAGGAAATGGATTAGTTTAAAGAAGCTTAAAAAGAATGAAAGTTCTATAGGGTGTCCTAAAGAGTTTGGTTACAAGGAATTGAAGTTTGCTACAAAAGGGTTTCATGGTTCAAGAATAATTGGAAATGGTTCATTTGGGACAGTTTATAAGGCTTTGTTTGTTTCTTCTGGTACAGTTGCTGCTGTTAAAAGATCAAGACATTCACACGAAGGGAAAACCGAGTTTTTATCCGAGTTATCGATTATAGCTGGTTTAAGGCACAAGAATTTAGTTCAACTTTTAGGTTGGTGTGTTGAGAAAGGTGAATTGTTACTTGTTTATGAGTTTATGGTTAATGGTAGCTTAGATAAGTTGCTTTATAAGGAATTTGAGTGTGGCATTTTGTTGAGTTGGATTCAAAGAGTTAACATTGTTGCTGGTTTGGCTTCTGTTTTAGCTTATTTGCATCAAGAATGTGAACAAAGAGTGATTCATAGAGATATTAAGACAGCGAATATATTGTTAGATGGAAATTTGAATCCAAGGTTAGGTGATTTTGGATTGGCAAAGCTTATGGATCATGATATGAGTCCGGTTTCGACGTTAACTGCCGGAACAATGGGATACCTAGCTCCTGAGTATCTTCAATACGGTAAAGCAACCGATAAAACCGATGTTTTTAGCTTCGGAGTTGTTGTTCTTGAAGTTGCTTGTGGTAGAAGGCCAATTGAGAAAGAGGGTCAAGAGATGGTTAATTTAGTTGATTTTGTTTGGGGACTTTATTCACAAGGGAAGTTAATTGAGGCCGTTGATAAGAGATTGAACGGCGAATTCGACGAAGATGAAATGAAGAAGATGTTATTGTTAGGTTTGAGTTGTGCAAATCCAAATAGTGAGGAAAGACCTTCTATGAGAAGAGTTTTGCAAATTCTTAACAATGAAGCTTTGCCTCTTGTTGTGCCTAAAGTGAAACCATGTCTTAGTTTCTCTTCTGGATTGTTATTGAGTTTTGATGAGATTGTTTCTGATTTTGATGAAAGGTTTAGTTCTATTAATCAATATAGTTGCAAGATACAAATTGAACCAAGTTGTTGA 1968 0.3684 MSPNTLLLFFFFFFFFLLPTTLSSQNTTFIFPSFTLRNITLLGDSFLRHGIVGLTRSTAVPASSSGTLLYNNPISHIPNSSFSFSTNFTFSITNTNPNPPSSSLNGFSFFINSTNSFISLNFHTNNNNQIDFHFNNTSIQKTIDFNFTNGNLITTWIDYKGPFDGQYKRQSNLSVYLSYENSSFSKPENPVLSFDVDLSEYFKEIELLYVGFSGSAEGSTELQQIMNWSFESFQFLVINQTQNKNSTFHHVGYQYEDIPASNATRKSHGKRFMIGFCLAIVGPAFFFVLLLVLGYVSFRKWISLKKLKKNESSIGCPKEFGYKELKFATKGFHGSRIIGNGSFGTVYKALFVSSGTVAAVKRSRHSHEGKTEFLSELSIIAGLRHKNLVQLLGWCVEKGELLLVYEFMVNGSLDKLLYKEFECGILLSWIQRVNIVAGLASVLAYLHQECEQRVIHRDIKTANILLDGNLNPRLGDFGLAKLMDHDMSPVSTLTAGTMGYLAPEYLQYGKATDKTDVFSFGVVVLEVACGRRPIEKEGQEMVNLVDFVWGLYSQGKLIEAVDKRLNGEFDEDEMKKMLLLGLSCANPNSEERPSMRRVLQILNNEALPLVVPKVKPCLSFSSGLLLSFDEIVSDFDERFSSINQYSCKIQIEPSC 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01063 655 CDD STKc_IRAK 338 604 - -
Trre6g01063 655 Gene3D Transferase(Phosphotransferase) domain 1 408 608 - -
Trre6g01063 655 Gene3D Phosphorylase Kinase; domain 1 297 407 - -
Trre6g01063 655 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 235 IPR013320 -
Trre6g01063 655 Gene3D - 24 233 - -
Trre6g01063 655 SUPERFAMILY Protein kinase-like (PK-like) 316 625 IPR011009 -
Trre6g01063 655 Pfam Legume lectin domain 115 234 IPR001220 GO:0030246
Trre6g01063 655 SMART serkin_6 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01063 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Trre6g01063 655 Pfam Protein kinase domain 333 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01063 655 PANTHER - 54 612 - -
Trre6g01063 655 ProSiteProfiles Protein kinase domain profile. 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01063 655 FunFam L-type lectin-domain containing receptor kinase VIII.1 408 620 - -
Trre6g01063 655 ProSitePatterns Protein kinases ATP-binding region signature. 338 361 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01063 Trre-Chr6 8258751 8260718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01063 1 642 Receptor kinase-like Gene Family AT5G55830 52.822 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre6g01063 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01063 - - gmx:100808744 711.835