Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01062 ATGCATGCAGGAGCTCCAGCACCACAAATCAACCCAAACAACAATGCCTTTGTGCCTCAATTGGTTGAGCAAGACAAAACTGCAGCTTCAATCAGAAAAGTGACAAAAATCATGCGACAAAGTTTGCCACCAAAAGCAAAAATCTCTACTAATTCAAAGGAGATGATTCAAAAATGTGTCTCAAAGTTCAAGAACATTATAACTAGCAAAGCCAATGAGCATTGTCTAAGAGAGTATAGAAAAGTTGTGAAGGCAGAAGACATATTATGGGCCATGAAGTCCCTAGGCTTTGATAACTATGATAAGGCTTTTACCCATTATCTCAAAAACTATCGAGATAATGGGCTTGGGCCTGGGCCTAAGGAACCACCTGTTGAGATTCCAAAGCCCATCTTAACTTCACAACATGTTGAGACATTTGTTGGGTTAAACACTCCCACAAATCGAAGCCCAATTATTGAAACTTTTGATGCAATGGACATGGATGAAGCTTTGGCTAACTTGGGTGAGTTGGATGTTGGTTCTTTAGACAATGCTGCTTCAACTAGCTTTGATGTTTCAAACTTTTTCAACTTTGATGGGTTTGTTGACAATGCTGAGTCAACTAGCTTTGATGTTTCAACTTATTTCAACTTTGATGGGTTTGATGAGAGATATGATAACTAG 666 0.3889 MHAGAPAPQINPNNNAFVPQLVEQDKTAASIRKVTKIMRQSLPPKAKISTNSKEMIQKCVSKFKNIITSKANEHCLREYRKVVKAEDILWAMKSLGFDNYDKAFTHYLKNYRDNGLGPGPKEPPVEIPKPILTSQHVETFVGLNTPTNRSPIIETFDAMDMDEALANLGELDVGSLDNAASTSFDVSNFFNFDGFVDNAESTSFDVSTYFNFDGFDERYDN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01062 221 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Trre6g01062 221 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Trre6g01062 221 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Trre6g01062 221 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 22 114 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre6g01062 221 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 92 IPR003958 -
Trre6g01062 221 SUPERFAMILY Histone-fold 33 114 IPR009072 GO:0046982
Trre6g01062 221 Gene3D Histone, subunit A 22 117 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01062 Trre-Chr6 8256721 8257386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01062 23 113 CCAAT-HAP3 Transcription Factor Family AT5G47670 53.846 5.57e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre6g01062 CBFD_NFYB_HMF 2.2e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01062 K08065 - tpra:123912904 354.369