Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01053 ATGTGGAAAACATTGTTTGAGATTGATACGAAGTATTGTCCAATTAAGCCTATGGGCCGAGGAGCATATGGCGTGGTGTGCTCATTCGTCAATAAAGAGACCGATGAGAAAGTGGCAATTAAGAAGATTGGCAATGTATTCGATAATCATGTTGATTCATTGAGAACTTTAAGGGAGTTGAAGCTGCTTAGACATGTTCGGCACGAGAATGTTATCACTTTGAAAGATGTTATGATTCCAGTCCAAAGAACAAGTTTTAAGGATGTCTACTTGGTCTATGAACTCATGGATACAGATCTTCATCATATTATCAAATCCTCTCAGTCACTCTCAAATGATCATTGCAAATTTTTCTTGTTTCAGCTACTTGAAGGTCTTAACTATCTCCATTCTGCAAATATTCTTCACCGGGACTTGAAGCCTGCGAATCTGCTTGTCAATGCAAATTGTGATTTGAAGATATGTGACTTCGGACTTGCCCGAACCACTCAAGTTGATGGCGAAAGTATGACAGAGTATGTTGTCACGCGTTGGTATCGTGCTCCAGAGCTTCTATTAGGATGTGACAATTACGGAACCTCTATTGACATGTGGTCCGTAGGATGCATTTTTGCCGAGATTCTTGGTAGAAAGCCAATTTTCCCTGGAAAAGATTCTCTAGACCAAATGAAACTAATTGTAAATGTTCTTGGAAACCAACATGAGTCTGATCTTGAGTTTATTGATAATCCAAAAGCCAAGGGGTTTATCAAATTACTACCCTATACACAAGGGACACCCTTCTCTCATCTATACCCACAAGCAGATCCATTAGCCTTAGATTTGTTACAAAAATTGCTTGTGTTTGATCCAACTAGAAGAATTACTGTATTAGAAGCACTTCAACATCCATATATGGCTGATCTTTATGATCCATGGTGTAACCCTTCTGCTCAAGTTCAAGTCAATCTTGACATAGATGATAATTGGGATGAACAAATGATTAGGGAAATGATGTGGAATGAGATGCTTCATTACCATCCTGAAGCTTCTTCTGTCAATGCATAG 1047 0.3878 MWKTLFEIDTKYCPIKPMGRGAYGVVCSFVNKETDEKVAIKKIGNVFDNHVDSLRTLRELKLLRHVRHENVITLKDVMIPVQRTSFKDVYLVYELMDTDLHHIIKSSQSLSNDHCKFFLFQLLEGLNYLHSANILHRDLKPANLLVNANCDLKICDFGLARTTQVDGESMTEYVVTRWYRAPELLLGCDNYGTSIDMWSVGCIFAEILGRKPIFPGKDSLDQMKLIVNVLGNQHESDLEFIDNPKAKGFIKLLPYTQGTPFSHLYPQADPLALDLLQKLLVFDPTRRITVLEALQHPYMADLYDPWCNPSAQVQVNLDIDDNWDEQMIREMMWNEMLHYHPEASSVNA 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01053 348 FunFam Mitogen-activated protein kinase 1 105 - -
Trre6g01053 348 FunFam Mitogen-activated protein kinase 96 325 - -
Trre6g01053 348 SMART serkin_6 12 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01053 348 Gene3D Transferase(Phosphotransferase) domain 1 96 325 - -
Trre6g01053 348 SUPERFAMILY Protein kinase-like (PK-like) 4 306 IPR011009 -
Trre6g01053 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Trre6g01053 348 ProSiteProfiles Protein kinase domain profile. 12 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01053 348 ProSitePatterns MAP kinase signature. 47 150 IPR003527 GO:0004707|GO:0005524|GO:0006468
Trre6g01053 348 Pfam Protein kinase domain 15 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01053 348 Gene3D Phosphorylase Kinase; domain 1 2 335 - -
Trre6g01053 348 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01053 Trre-Chr6 8185713 8186869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01053 1 348 MAP Kinase Gene Family AT2G18170 77.874 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trre6g01053 Pkinase 8.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01053 K20537 - gmx:100783422 582.022