Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01042 ATGGTTTCATTTTCTTCAAATTATGCAATAGGAGAAAACAGCATGGTACAGAACATGTCTCAACCACCAACAACTACTACTACCTTATCATCATCATCATCTCAAGTTGTTCAACCTTCATTTTTGACTAGAATGGCTATGAGAATATCAAGATCAAGATGGTTCACTTTTTTAAGAAGAGTATTTCATTACCAAAATGGACCAAGATCAAATCTTGGTTCTAACCCTTTTAATTCTAGTACATGGATGATGTTGGAATTGATTGCTTTGTTGGTTCAAATAATAAGCACAACATTTACTTTGACAATTTCAAAGAATGAGAAACCTGTTTGGCCTATGAGGGTGTGGATAGTTGGTTATGACATTGGATGTGTTCTTAATTTGTTGTTACTTCATGGTCGCTATCATCAAATTAATGTCATTCAAGGTGATTCTGATATTGAAAACCAAACAACCAATGAAGAAAACAGTGTATATAGGAGCACACATTTGATGAGCAAATGCAGAAGTTCATTAGAGCTTTTCTTTGCAATATGGTTTGTGATGGGAAATGTTTGGTCATTTGACTCACGTTTTGGAACATTACAACAAGCTCCAAAACTCCAAGTCCTTTGCATAATCCTTCTTGTTTGGAATGCAATTTGTTACTCTTTCCCTTTTCTTCTCTTTTTGTTGCTTTGTTGTTGTGTGCCACTCATTAGCACACTCCTTGGTTACAACATGAACATTGGCTCCTCTTCTAAAGGTGCATCTGATGATCAAATCTCCCAACTTCTATCTTGGAGATTTAAAGTGGCTCATTCCAACAACTTAGATCTCGACAATGATTCTCAATGCAGTGAAAGATTGATCTGCGAAGAGTCGGAATGTTGCATATGCTTGGCCAAGTACAAAGACAAAGAAGAAGTTAGGCAATTGCCATGTTCCCATATGTTTCATCTAAAATGTGTGGATCAATGGCTGAAAATTATATCATGCTGCCCTCTTTGCAAACAAGGATTACAAAGGTAG 1011 0.362 MVSFSSNYAIGENSMVQNMSQPPTTTTTLSSSSSQVVQPSFLTRMAMRISRSRWFTFLRRVFHYQNGPRSNLGSNPFNSSTWMMLELIALLVQIISTTFTLTISKNEKPVWPMRVWIVGYDIGCVLNLLLLHGRYHQINVIQGDSDIENQTTNEENSVYRSTHLMSKCRSSLELFFAIWFVMGNVWSFDSRFGTLQQAPKLQVLCIILLVWNAICYSFPFLLFLLLCCCVPLISTLLGYNMNIGSSSKGASDDQISQLLSWRFKVAHSNNLDLDNDSQCSERLICEESECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLKIISCCPLCKQGLQR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01042 336 SMART ring_2 290 330 IPR001841 -
Trre6g01042 336 ProSiteProfiles Zinc finger RING-type profile. 290 331 IPR001841 -
Trre6g01042 336 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 25 334 - -
Trre6g01042 336 Pfam RING-like zinc finger 289 317 IPR001841 -
Trre6g01042 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 335 IPR013083 -
Trre6g01042 336 SUPERFAMILY RING/U-box 281 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01042 Trre-Chr6 8103062 8106034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01042 41 334 C3H Transcription Factor Family AT4G26580 65.772 3.84e-136 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01042 - - gmx:100818715 513.842