Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01025 ATGCCTGAAATCTTAAGGAATCTCTCACTTTCTCCCACAAATTTCTCCTTCACTTTCACCTTCATTATCTTATTAAACACTATTCTTATCTTTCCATTTTGTTACTCTTACTCACTTAATGAACAAGGACAAGCTCTTATAGCATGGAAAAACAGTTTAAACAGTACTTTAGAATCTTTAGATGCATTATCATCATGGAATTCTTCATCCATAACACCATGCAATTGGTTTGGAGTGTATTGCAATTCACAAGGAGATGTCATAGAGATAAACTTGAAAGCATTGAGCTTACAAGGCTCATTACCTTCAAATTTTCAATCCTTAAAGTCCTTGAAGATTCTCAACCTCTCATCAGCAAATATCACAGGAACGATACCGAAAGAGATTGGAGATTATAAAGAGCTTATCTTTGTTGATCTAAGTGGAAATTCTCTATCTGGTGAAATACCAGAAGAAATTTGTAGGCTAAGTAAACTTCAAAGTTTGTTTCTTCATACAAATTTCTTTGAAGGAAACATTCCATTCAACATTGGAAATCTATCAAGTCTTGTGAACTTGACACTCTATGATAATCATTTGAGTGGTGAAATTCCAAAGAGTATTGGTTTGTTGAACAAGCTTCAAGTGTTTAGAGCTGGTGGAAATAAAAATCTTAAGGGTGAGATTCCATTTGAGATTGGAAACTGCACAAACTTGCTCCTATTAGGCCTTGCAGAGACAAGTATTTCTGGAAGCATTCCTTCTTCAATTCAAATGCTGAAAAGAATCAAAACTGTAGCTATTTACACAACTCTATTGTCAGGTTCAATTCCACAAGAGATTGGTAATTGCAGTGAGTTGCAGAATCTGTATTTGTATCAGAACTCTCTCTCAGGTTCAATTCCAACTGAACTTGGAGAACTTAACAAGCTCAAGAGTCTACTGTTATGGCAGAACAATTTGGTAGGAACTATTCCAGAAGAGATTGGAAGATGCAAAGAGATTCAAGTCATTGACTTATCAGAAAATCTTTTAACAGGTAGCATACCGAAGATTCTCGGCGAGCTTTCAAATCTTCAAGAGCTTCAATTGAGTGTGAATCATCTCTCAGGTATTATACCTCCTGAGATTTCAAATTGTACTTCTTTGACTCAACTTGAAGTTGACAACAATGCTCTATCTGGTGAGATTCCTCATCTTATTGGCAACTTGAGAAGCTTGAATTTGTTCTTTGCTTGGCAGAACAAGTTAACAGGAAGAATTCCAGATAGTCTTTCAGATTGTCAAGAGCTTCAGTCACTTGATCTTTCTTACAATAATTTGATCGGTGAAATACCTAAAAATCTATTTAATTTGAGGAATCTTACAAAACTTTTGCTTATTTCCAATGATTTATCAGGCTTTATTCCACCTGATATAGGAAACTGCACAAGCCTTTATAGGCTTAGATTGAATCACAATAGAATATCAGGTAGCATTCCGAATGAGATCGGTAACTTGAAGAGTTTAGATTTTGTTGATATAAGTAGCAATCATCTTGTTGGTGTGATTCCTCCAACACTTTCTGGTTGTCAAAATCTCGAGTTTCTAGACCTTCATTCCAATAGTCTCACCGGTTCAGTTCCAGATTCTCTTCCGAAAAGCCTACAGTTGATTGACTTGTCAGACAATAGGCTATCAGGTGAATTGAGTCACACCATTGGTTCATTAGTTGAATTAAGCAAACTAAACTTAGGAAAGAATCGATTAAGTGGAAGAATCCCATCAGAGATTTTATCTTGTTCTAAGCTACAGCTTCTAGACCTTGGAAGCAATAGTTTCACAGGAGAGATTCCAAAGGAACTGAGTCTAATTCCTTCACTAGAAATCTCTCTTAACCTTAGCTTCAACCATTTTTCCGGTGAAATACCATCACAATTCTCTAGTCTTAGCAAACTAGGAGTGCTTGATCTCTCACATAACAAACTCTCAGGCAATTTAGATCCTCTCTCTGACCTTCAAAACCTTGTTTCCTTAAATGTTTCATTCAATTCCTTCTCTGGTAAGTTACCTAACACTCCATTCTTCCATAAACTCCCTCTTAGTGATCTTGCCGAAAACGAAGGTCTTTACATTGCTCGAGATGATGCGATTCCTGATAATAGAATTGAAACCAAAGGTCATGAAAAAGCAGTTATGAAATCTGTAATGTCCATTCTGTTAAGCACAAGTGCAGTACTCGTTCTTCTCACAATCTATGTTTTGATCCGTTCTCATATAGCGAACAAATCACTCATGGAAAATGAAAGTTGGGAAGTGACTTTGTATCAAAAGTTTGAACTCTCCATTGATGACATTGTATTGAATTTAACATCATCCAATGTGATTGGCACCGGAAGTTCAGGAGTTGTGTACAAGGTAACAGTTCCAAACGGCGAAACACTTGCAGTTAAAAAGATGTGGTCATCAGAAGAGTCAGGAGCATTCAATTCTGAAATTCAAACCTTAGGATCAATCAGACACAAGAATATCATTAGGCTTCTTGGTTGGGGATCCAACAGAAACCTGAAGCTGCTGTTTTACGACTATCTTCCCAATGGAAGCCTTAGTTCATTACTTCATGGTTCTGGAAAGGGAAAAGCAGAATGGGAAACAAGATATGATGTTATATTAGGTGTGGCTCATGCACTTTCATATTTGCATCATGATTGTGTTCCTGCCATAATGCATGGAGATGTCAAAGCCATGAATGTGTTATTAGGCCATGGATATCAACCTTACCTTGCTGACTTTGGCTTAGCGAGAATTGTAGTAGCTGAAAATGATGACAATACTAATTCCAAGCCACTCCAAAGACATCATTACCTTGCTGGTTCATATGGATACATGGCTCCTGAACATGCATCAATGCAGCCTATTACTGAGAAGAGTGATGTTTACAGTTATGGTATGGTTCTACTTGAGGTCTTAACAGGAAGACACCCTTTAGATCCAACTCTTCCAAGGGGTTCAAACATGGTTCAATGGGTTAGGAATCATTTATCAAGCAAAGGAGACCCTTCTGAAATTCTTGATACAAAGCTTAGAGGAAGGGCTGACCCTACCATGCATGAAATGCTACAAACTTTAGCAGTGTCATTTCTATGTGTAAGCACAAGAGCCGCTGACCGTCCAGCAATGAAAGATGTCGTTGCAATGCTCAAAGAAATTAAACCTGTTGAGACTTCAAGAGGAGACACCGATGTACTGAAATTAGGAGGTTTAACATCACATAGTTCTCCACCACCTCCTAAGAATGTACTTGCACATGGATCATCTACTTGCTCCTATAATTTCTCAGATGGTTAA 3306 0.3745 MPEILRNLSLSPTNFSFTFTFIILLNTILIFPFCYSYSLNEQGQALIAWKNSLNSTLESLDALSSWNSSSITPCNWFGVYCNSQGDVIEINLKALSLQGSLPSNFQSLKSLKILNLSSANITGTIPKEIGDYKELIFVDLSGNSLSGEIPEEICRLSKLQSLFLHTNFFEGNIPFNIGNLSSLVNLTLYDNHLSGEIPKSIGLLNKLQVFRAGGNKNLKGEIPFEIGNCTNLLLLGLAETSISGSIPSSIQMLKRIKTVAIYTTLLSGSIPQEIGNCSELQNLYLYQNSLSGSIPTELGELNKLKSLLLWQNNLVGTIPEEIGRCKEIQVIDLSENLLTGSIPKILGELSNLQELQLSVNHLSGIIPPEISNCTSLTQLEVDNNALSGEIPHLIGNLRSLNLFFAWQNKLTGRIPDSLSDCQELQSLDLSYNNLIGEIPKNLFNLRNLTKLLLISNDLSGFIPPDIGNCTSLYRLRLNHNRISGSIPNEIGNLKSLDFVDISSNHLVGVIPPTLSGCQNLEFLDLHSNSLTGSVPDSLPKSLQLIDLSDNRLSGELSHTIGSLVELSKLNLGKNRLSGRIPSEILSCSKLQLLDLGSNSFTGEIPKELSLIPSLEISLNLSFNHFSGEIPSQFSSLSKLGVLDLSHNKLSGNLDPLSDLQNLVSLNVSFNSFSGKLPNTPFFHKLPLSDLAENEGLYIARDDAIPDNRIETKGHEKAVMKSVMSILLSTSAVLVLLTIYVLIRSHIANKSLMENESWEVTLYQKFELSIDDIVLNLTSSNVIGTGSSGVVYKVTVPNGETLAVKKMWSSEESGAFNSEIQTLGSIRHKNIIRLLGWGSNRNLKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVILGVAHALSYLHHDCVPAIMHGDVKAMNVLLGHGYQPYLADFGLARIVVAENDDNTNSKPLQRHHYLAGSYGYMAPEHASMQPITEKSDVYSYGMVLLEVLTGRHPLDPTLPRGSNMVQWVRNHLSSKGDPSEILDTKLRGRADPTMHEMLQTLAVSFLCVSTRAADRPAMKDVVAMLKEIKPVETSRGDTDVLKLGGLTSHSSPPPPKNVLAHGSSTCSYNFSDG 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01025 1101 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 216 341 - -
Trre6g01025 1101 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 745 849 - -
Trre6g01025 1101 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 316 1047 - -
Trre6g01025 1101 Pfam Protein kinase domain 779 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01025 1101 SUPERFAMILY Protein kinase-like (PK-like) 772 1053 IPR011009 -
Trre6g01025 1101 MobiDBLite consensus disorder prediction 1064 1088 - -
Trre6g01025 1101 PRINTS Leucine-rich repeat signature 542 555 - -
Trre6g01025 1101 PRINTS Leucine-rich repeat signature 636 649 - -
Trre6g01025 1101 FunFam Leucine-rich receptor-like protein kinase family protein 39 203 - -
Trre6g01025 1101 Pfam Leucine Rich Repeat 424 444 IPR001611 GO:0005515
Trre6g01025 1101 ProSiteProfiles Protein kinase domain profile. 776 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01025 1101 FunFam Leucine-rich receptor-like protein kinase family protein 344 616 - -
Trre6g01025 1101 ProSiteProfiles Leucine-rich repeat profile. 638 660 IPR001611 GO:0005515
Trre6g01025 1101 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 850 1071 - -
Trre6g01025 1101 Pfam Leucine rich repeat 328 386 IPR001611 GO:0005515
Trre6g01025 1101 ProSiteProfiles Leucine-rich repeat profile. 423 446 IPR001611 GO:0005515
Trre6g01025 1101 SMART serkin_6 776 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01025 1101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 894 906 IPR008271 GO:0004672|GO:0006468
Trre6g01025 1101 Gene3D Ribonuclease Inhibitor 438 538 IPR032675 -
Trre6g01025 1101 Gene3D Ribonuclease Inhibitor 39 201 IPR032675 -
Trre6g01025 1101 Gene3D Ribonuclease Inhibitor 343 437 IPR032675 -
Trre6g01025 1101 Gene3D Ribonuclease Inhibitor 235 342 IPR032675 -
Trre6g01025 1101 Gene3D Ribonuclease Inhibitor 617 702 IPR032675 -
Trre6g01025 1101 SUPERFAMILY RNI-like 89 411 - -
Trre6g01025 1101 SMART LRR_typ_2 493 517 IPR003591 -
Trre6g01025 1101 SMART LRR_typ_2 108 132 IPR003591 -
Trre6g01025 1101 SMART LRR_typ_2 301 325 IPR003591 -
Trre6g01025 1101 SMART LRR_typ_2 445 469 IPR003591 -
Trre6g01025 1101 SMART LRR_typ_2 180 204 IPR003591 -
Trre6g01025 1101 SMART LRR_typ_2 349 373 IPR003591 -
Trre6g01025 1101 SMART LRR_typ_2 563 587 IPR003591 -
Trre6g01025 1101 Gene3D Transferase(Phosphotransferase) domain 1 850 1069 - -
Trre6g01025 1101 Pfam Leucine rich repeat N-terminal domain 40 82 IPR013210 -
Trre6g01025 1101 SUPERFAMILY RNI-like 310 670 - -
Trre6g01025 1101 Gene3D Phosphorylase Kinase; domain 1 741 849 - -
Trre6g01025 1101 Gene3D Ribonuclease Inhibitor 539 616 IPR032675 -
Trre6g01025 1101 ProSitePatterns Protein kinases ATP-binding region signature. 782 805 IPR017441 GO:0005524
Trre6g01025 1101 FunFam Putative LRR receptor-like serine/threonine-protein kinase 617 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01025 Trre-Chr6 8002433 8006084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01025 37 1100 Receptor kinase-like Gene Family AT5G56040 66.262 0.0 1406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre6g01025 Pkinase 1.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01025 - - psat:127084696 1892.47