Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01024 ATGCCTCAGGAGGGGTCCCAAAACTCATTTTTCACATCTCCTTCAAAGAGAGGATTGAAGGGTTTAGTTTCTATGAACATGAAGGAAGCTTCATCCCCTGCCATAGAGGAGAGTTTCAACGATTATGATTTTGCTCATAGGAAAGCAGAAGAAGCAGCTTCAAGAAGATACGAAGCATCAGAATGGTTACGTCAAATGGACAACATTGCATCTTCATTCTTACCACAAAAACCCTCACAACAACAATTCTGTCTCGCACTTCGCAACGGACTCATTCTCTGCAATGTCCTCAACAAAGTGAATCCTGGTGCTGTTGTCAAAGTTGTGGATAATCCTGCACTTGCTGCTACTGCTACTGTTGAAGGAGCTGCACATTCTGCTATTCAGTATTTTGAGAATATGAGAAATTTTCTTTATGCTGTTAAAGATATGCAACTATTGACTTTTGAAGCTTCTGATTTGGAGAAGGGAGGTTCATCAAATAAAGTTGTGGACTGCATTCTATGTTTGAAAGGTTACTATGAATGGAAACTATCTGGTGGAGTTGGTGTGTGGAGGTATGGTGGAACTGTGAGGATTACTTCCTTACCAAAGAGTTCTCCTTCTTCCTCCATAGTTGGCAGTGAAAGTCTTGATGATTCACTTGACGAGTCCGAGTCATCGCAGTATGAACATCTGCTTCAATTTCTTCACCTCTCTGAAGAGTTCTTGAATGAAGAAACCAAAACTACCAATGTTCTTGTTTTCCTTTTTGATCACTTTGGACTCAGACTTCTTCAGGCTTACCTTAGAGAGACCGATGGGATTGATGATCTGCCTCTCAATACAATGGTAATTGATACCTTACTCAGCAAGGTAGCCAAGGATTTCTCGTCTTTGCTTGTTGCACAAGGCACTGAGCTTGGACTTTTCCTGAAGAAAATATTAAAAGGGGATATTGGCTGTCTCTCAAAGAGGGAGTTTGTAGAAGCTATATCACTATATCTTAATCAAAGAAGTAGTTTGGCATCAAATGATTTCTCCAAATTCTGCAGTTGTGGTGGCAAGCGTGATAGTGTTCGACAAAATGTCAATTACTCTGCCAAATATGGTGAAGTAATCAATACTCAACAGGAACAACTTGAGAGGATGAAATGCTTTTTTGAAGATACAAAACTTGAAGTCAAACAAATTCAATCAGAGTGGGAACAAGAATTTAGTAGGCTAGAACATCATATTAAGAGCCTTGAAGTGGCCTCCACTTCTTACCATAATGTTTTGGAAGAGAACCGTTTTCTTTACAACCAAGTACAAGACCTCAAAGGAGCAATTAGGGTCTACTGTAGAGTGAGACCCTTCTTACCGGGACAATCAAATGGACAGTCTACGGTAGACTATATTGGAGAAAATGGAGACATGATGATTGTGAATCCCCTCAAGCAAGGAAAAGATGCAAGAAAGGTGTTTTCATTCAATAAGGTGTTTGGAACAAGTGTAACACAAGAACAAATTTATGCTGACACTCAACCGTTGATCAGGTCTGTTTTAGATGGTTATAATGTATGTGTCTTTGCATATGGACAGACTGGTTCAGGAAAGACCTACACAATGAGCGGCCCTGATCTATCAGCTGAAGAGACATGGGGTGTAAACTATAGGGCTTTACGTGATTTATTTTATATATCAAAGGAAAGATCAGATTCCATAAAATATGAAGTTTTCGTCCAGATGATTGAAATTTACAATGAACAAGTGAGAGATTTATTAATCAGTGATGGCTCTAACAGAAGATATCCTTTAAATATAAGAAACACCTCCCAACTGAATGGCCTCAATGTGCCTGATGCATATTTAGTTCCGGTTACTTGTACTCGAGATGTTCTACAATTAATGAGAATTGGTCAGAAAAACCGCGCTGTAGGTGCTACAGCTCTAAATGAGAGAAGCAGTCGTTCTCACAGTGTATTGACTGTTCATGTTCGAGGCAGGGAGTTAGTTTCTAACTCCATTCTTAGGGGTTGTCTCCATCTTGTGGATTTGGCTGGTAGTGAGAGAGTTGACAAATCTGAGGCTGTTGGTGAGAGACTAAAGGAGGCCCAACATATAAATAGATCACTTTCAGCACTTGGGGATGTTATTTCTGCTTTGGCACAGAAAAGTTCACATATCCCTTACAGAAATAGCAAGCTCACACAAGTGTTACAAGATTCTTTAGGAGGGCATGCAAAAACTTTGATGTTTGTTCATATAAATCCCGAACTTAATGCTATTGGGGAGACAATTAGCACACTCAAGTTTGCTGAGAGGGTTGCTTCCATTGAACTCGGGGCTGCTCAATCTAATAAAGAAACCGGGGAAATTCGAGAACTGAAGGAAGAGATATCAAGTCTCAAACTGACATTGGAGAGAAAAGAAACAGAGCTGGAGCAGTTGAAAGCTGGGAATGCTCGAAACACTACAGAATCTCCGAAACCAAGAGCTATTTCACCTTATCGTTTGCCTAAATATGGCACCAGTGGAAACACGAAGCCTGAAACTAGTCAACGACTTATGGATGATAGAAACTTTGAGGCTAGAAGTTGTTCTTCGGGTAAGCAAAGAAGGTCAAGGTTTCCCTCAACATTAATGGACAAGGAGTCCATACCGAAAATGTCCCTTCTCACTGAAGAAAAACTAGCGAGCTCACGGAAAGGAAGATCACCATCACCTCCAGTTAGAAGATCAACATCTACTGATAGAGGGTCAGTCATTAAAAGTAAATTAAAAAATGACACAGCAGAGAATCAACCAGTATTAAAGCATCCATTTCCCGCTCGAGTACCTGCTAACAAATTCCTTGCCACAATGCCAATGGCTGCATCTCTTGAGAATAATGCAAGGTTGCATGTGAATTCACCAGAGCCAGTAAAGCATGAAGAGGAACAATTCAAACAAGCACTTAGTGCTGTAAGACAAGGCGGTGTTAGAAAAAGCAAGGTTGAAAGTAAGGCTAAAGCAAAGCATCATCAACTTTCTCCCTTTAAGCTTCAAAATCCTGATTTGATCCCAACATTTATTTCTGGCATGGAGTTTGTTGGTGAAAAGACTGCGGAGACACCTCCAAAGAGTGATCACTCTGATCCCGAAAATGATCTTAGAATTGTTGAGTCTCTTGTTCATGGTGCTTTAAATCTCAATAAGATACGTCAGAACTTTCCAAAGAATTTTCAGAACCTTGAATCAAGAAAAATAGTGCAAGGAGGAGAGCCTTTATCAGCTAGCAAAGTTGAAAACAAACTTTTGCATGGTTCAGGTAGCAATCATAAAGAAGGAAATAATACATCGATGCCTGAATTTAGAAGGAGCCGATCTACGCCACGCGGAAAGTTTTTTGGTTTATCATGA 3363 0.4008 MPQEGSQNSFFTSPSKRGLKGLVSMNMKEASSPAIEESFNDYDFAHRKAEEAASRRYEASEWLRQMDNIASSFLPQKPSQQQFCLALRNGLILCNVLNKVNPGAVVKVVDNPALAATATVEGAAHSAIQYFENMRNFLYAVKDMQLLTFEASDLEKGGSSNKVVDCILCLKGYYEWKLSGGVGVWRYGGTVRITSLPKSSPSSSIVGSESLDDSLDESESSQYEHLLQFLHLSEEFLNEETKTTNVLVFLFDHFGLRLLQAYLRETDGIDDLPLNTMVIDTLLSKVAKDFSSLLVAQGTELGLFLKKILKGDIGCLSKREFVEAISLYLNQRSSLASNDFSKFCSCGGKRDSVRQNVNYSAKYGEVINTQQEQLERMKCFFEDTKLEVKQIQSEWEQEFSRLEHHIKSLEVASTSYHNVLEENRFLYNQVQDLKGAIRVYCRVRPFLPGQSNGQSTVDYIGENGDMMIVNPLKQGKDARKVFSFNKVFGTSVTQEQIYADTQPLIRSVLDGYNVCVFAYGQTGSGKTYTMSGPDLSAEETWGVNYRALRDLFYISKERSDSIKYEVFVQMIEIYNEQVRDLLISDGSNRRYPLNIRNTSQLNGLNVPDAYLVPVTCTRDVLQLMRIGQKNRAVGATALNERSSRSHSVLTVHVRGRELVSNSILRGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSSHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNAIGETISTLKFAERVASIELGAAQSNKETGEIRELKEEISSLKLTLERKETELEQLKAGNARNTTESPKPRAISPYRLPKYGTSGNTKPETSQRLMDDRNFEARSCSSGKQRRSRFPSTLMDKESIPKMSLLTEEKLASSRKGRSPSPPVRRSTSTDRGSVIKSKLKNDTAENQPVLKHPFPARVPANKFLATMPMAASLENNARLHVNSPEPVKHEEEQFKQALSAVRQGGVRKSKVESKAKAKHHQLSPFKLQNPDLIPTFISGMEFVGEKTAETPPKSDHSDPENDLRIVESLVHGALNLNKIRQNFPKNFQNLESRKIVQGGEPLSASKVENKLLHGSGSNHKEGNNTSMPEFRRSRSTPRGKFFGLS 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01024 1120 Pfam Calponin homology (CH) domain 76 175 IPR001715 GO:0005515
Trre6g01024 1120 CDD CH_AtKIN14-like 55 171 - -
Trre6g01024 1120 PRINTS Kinesin heavy chain signature 511 532 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g01024 1120 PRINTS Kinesin heavy chain signature 667 685 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g01024 1120 PRINTS Kinesin heavy chain signature 716 737 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g01024 1120 PRINTS Kinesin heavy chain signature 636 653 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g01024 1120 ProSiteProfiles Calponin homology (CH) domain profile. 53 175 IPR001715 GO:0005515
Trre6g01024 1120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 437 803 IPR027417 -
Trre6g01024 1120 ProSiteProfiles Kinesin motor domain profile. 436 766 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g01024 1120 PANTHER KINESIN-LIKE PROTEIN KLP-3 60 943 IPR027640 GO:0003777|GO:0007018
Trre6g01024 1120 Pfam Kinesin motor domain 442 766 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g01024 1120 FunFam kinesin-like protein KIN-14F 45 175 - -
Trre6g01024 1120 Gene3D - 44 175 IPR036872 -
Trre6g01024 1120 Gene3D Kinesin motor domain 431 808 IPR036961 -
Trre6g01024 1120 SUPERFAMILY Calponin-homology domain, CH-domain 47 203 IPR036872 -
Trre6g01024 1120 SMART kinesin_4 434 774 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g01024 1120 SMART ch_5 55 173 IPR001715 GO:0005515
Trre6g01024 1120 MobiDBLite consensus disorder prediction 894 919 - -
Trre6g01024 1120 Coils Coil 773 814 - -
Trre6g01024 1120 MobiDBLite consensus disorder prediction 840 857 - -
Trre6g01024 1120 FunFam kinesin-like protein KIN-14F 431 807 - -
Trre6g01024 1120 MobiDBLite consensus disorder prediction 1086 1120 - -
Trre6g01024 1120 MobiDBLite consensus disorder prediction 1086 1107 - -
Trre6g01024 1120 MobiDBLite consensus disorder prediction 802 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01024 Trre-Chr6 7990547 7998694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01024 427 766 Calmodulin-binding Proteins AT5G65930 43.188 4.20e-75 270