Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01021 ATGAGTGATTCTCTTTACAAAGTTGAAACAACACCTCGTCTTGCTCAATGGAGAATCGAAAATTTGGCTTCTTGCACTTATCGCAAATCAGATCCTTTCAAGATTGGAAACTGGAATTGGTATTTGTCGGTGGAGAAGCACAAGGTTGTGTTTGTTAAATTGTTTCCTGAAATATCCAATTTAACAAGAGACAATCCTCCAATTGCATCTTTTATCATGCGTGTGGTTAGTTCTGCTTTTGGAGATCGAAAAGCTATCACTCATCCAGAGATAAAGGACAAAGTGATCAAGAGTAATGAGGATTTTGTTTGGTCACTTGAGATTCCACTGTCTGGAAAATTCATTATTGATGTTGATTTCCTTGATTTGAAGATTGCATCCCCAGATGGTGGAGAACCTTGCTCCATATGGGGTGGTGAAGGATTTACTCAAGAGAGATCAAATGCAAGAGCTTTAGGGTCTCTTGGTATAATGTTCAGAGAAAGCATTCACACTGATATCACTATCAATACCTCTGATGGAAGTATAGGAGTTCATAGAGCAGTTCTTTCGTCCCGGTCACCTGTCTTTCGGAGCATGTTTTCGCACGATCTTAAGGAGAAAGAGTTGTCAACCATAAACATCACAGACATGACAATTGAAACATGCCAAGCTTTTTTCAATTATCTTTACGGGATCATCAAAAACGAAGAATTTCTGACACATAGGCTGGCCCTTCTGCATGCAGCCGACAAATACGACATATCTGACTTGAGAGAAGCCATCCATGAAAGTCTGCTAGAAGATATTGATACTAAAAATGTACTTGAGAGACTCCAAAATGCATCACTATATCGGTTGACGAAACTGAAGACGAGTTGTATTCAGTACCTTGTTAAATTTGGTAAAATATTTGAAATTCGAGATGATTTCAATACCTTCCTCCAAAATGCGGATAGGGATCTCATTACTGAAGTCTTTGCGGAAATTATCGGTGTCTGGAAAGGATATTGA 993 0.3877 MSDSLYKVETTPRLAQWRIENLASCTYRKSDPFKIGNWNWYLSVEKHKVVFVKLFPEISNLTRDNPPIASFIMRVVSSAFGDRKAITHPEIKDKVIKSNEDFVWSLEIPLSGKFIIDVDFLDLKIASPDGGEPCSIWGGEGFTQERSNARALGSLGIMFRESIHTDITINTSDGSIGVHRAVLSSRSPVFRSMFSHDLKEKELSTINITDMTIETCQAFFNYLYGIIKNEEFLTHRLALLHAADKYDISDLREAIHESLLEDIDTKNVLERLQNASLYRLTKLKTSCIQYLVKFGKIFEIRDDFNTFLQNADRDLITEVFAEIIGVWKGY 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01021 330 SMART BTB_4 165 263 IPR000210 GO:0005515
Trre6g01021 330 ProSiteProfiles BTB domain profile. 165 224 IPR000210 GO:0005515
Trre6g01021 330 PANTHER OS08G0495500 PROTEIN-RELATED 6 329 IPR044714 -
Trre6g01021 330 CDD BTB_POZ_ZBTB_KLHL-like 164 246 - -
Trre6g01021 330 Pfam BTB/POZ domain 160 261 IPR000210 GO:0005515
Trre6g01021 330 Gene3D Potassium Channel Kv1.1; Chain A 143 293 IPR011333 -
Trre6g01021 330 SUPERFAMILY POZ domain 150 261 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01021 Trre-Chr6 7942238 7944462 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre6g01021 BTB 4.5e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01021 K10523 - gmx:100790186 563.148