Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01013 ATGACGGCAACACTCACTCTCGGCGGTCTCTCCGCCGTCCGGCCACTCCGATTTTCCGAAAGCTGTTCCACTTCCACCTCCGCAAGGTTCTTCCAGAAGCCAACTTCCAATTTCTCAAGTCGCCGCCGGATTTCAATCCGAGCAGCAACGGCGGTAGTCGAGACACGGAGGCCGGCGACGAGTCTCTACGAAGTTCTACGTTTAAAGCCTGGTGCATCTCCTACTGAGATTAAATCAGCTTACCGGAGTCTGGCGAAGGTTTACCACCCCGACGCGGCGGCGAAGCGGTTGCCGGAGTGTGGTGACGGGGACTTCATCGAGATTCGTAACGCTTACGAGACACTTTCCGATCCATCGGCAAGAGCGATTTACGATATGTCACTGATGGCGGCCCACGGAGGAAGGAGCCGGCGGTTTACCGCAGCTCCGGTGACACAGAAACGGCATTCTGGATATTATAGTAATCGGAGATGGGAAACGGACCAATGTTGGTAG 495 0.5556 MTATLTLGGLSAVRPLRFSESCSTSTSARFFQKPTSNFSSRRRISIRAATAVVETRRPATSLYEVLRLKPGASPTEIKSAYRSLAKVYHPDAAAKRLPECGDGDFIEIRNAYETLSDPSARAIYDMSLMAAHGGRSRRFTAAPVTQKRHSGYYSNRRWETDQCW 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01013 164 Pfam DnaJ domain 62 125 IPR001623 -
Trre6g01013 164 SUPERFAMILY Chaperone J-domain 58 134 IPR036869 -
Trre6g01013 164 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 11 164 - -
Trre6g01013 164 ProSitePatterns Nt-dnaJ domain signature. 105 124 IPR018253 -
Trre6g01013 164 Gene3D DnaJ domain 47 146 IPR036869 -
Trre6g01013 164 CDD DnaJ 63 117 IPR001623 -
Trre6g01013 164 SMART dnaj_3 60 120 IPR001623 -
Trre6g01013 164 PRINTS DnaJ domain signature 100 120 IPR001623 -
Trre6g01013 164 PRINTS DnaJ domain signature 63 81 IPR001623 -
Trre6g01013 164 PRINTS DnaJ domain signature 81 96 IPR001623 -
Trre6g01013 164 ProSiteProfiles dnaJ domain profile. 61 128 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01013 Trre-Chr6 7891247 7891741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01013 63 125 C2H2 Transcription Factor Family AT1G74250 48.485 1.22e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01013 - - tpra:123912861 293.508