Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01009 ATGGAAATAGACTATGGCCCTTCATGTCACACTTATGATGAAGAAAATAACAATATTGATCATAGTGATGATGAATCAGTTATGATTTTGGATGAATTAAGTTCTCCCCGACCACATAAGAAAGTTAGAGGTGAGACTGAGACCGAGAACATTACTAAAAGAACTTCATCACTGAATATGCCAAAGGAAGCTAGAGCTCAGGAAATTGCAGAAAACTTCATCTCAAGCAATCCTTTTTTCACAATTCTTATAAAGCCTCACACGATCAAAAATCATCAGCTGGGTGTACCAAGTTTAAAAGGGGTTATTGAGAACAAAGCGAAGAATGTGATGCTGCAGATTGGAAAAAGATCATGGAATGTGAAATTGATCTATTGTAATGACAATAGAAATTGTCGACGCCTTTCGGCGGGTTGGCGCTTATTTGCAAGTGAAAGTGGACTGCAACCAGGAAATGTTTGTATCTTTGAAGTGATAAACAAGAAAAATTTAGTTTTTAAAGTTCATGTTTTCTAA 516 0.3605 MEIDYGPSCHTYDEENNNIDHSDDESVMILDELSSPRPHKKVRGETETENITKRTSSLNMPKEARAQEIAENFISSNPFFTILIKPHTIKNHQLGVPSLKGVIENKAKNVMLQIGKRSWNVKLIYCNDNRNCRRLSAGWRLFASESGLQPGNVCIFEVINKKNLVFKVHVF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01009 171 SMART B3_2 79 169 IPR003340 GO:0003677
Trre6g01009 171 CDD B3_DNA 79 171 IPR003340 GO:0003677
Trre6g01009 171 SUPERFAMILY DNA-binding pseudobarrel domain 75 171 IPR015300 -
Trre6g01009 171 Pfam B3 DNA binding domain 79 169 IPR003340 GO:0003677
Trre6g01009 171 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 42 171 IPR044837 -
Trre6g01009 171 Gene3D - 58 171 IPR015300 -
Trre6g01009 171 MobiDBLite consensus disorder prediction 1 23 - -
Trre6g01009 171 ProSiteProfiles B3 DNA-binding domain profile. 79 171 IPR003340 GO:0003677
Trre6g01009 171 MobiDBLite consensus disorder prediction 37 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01009 Trre-Chr6 7830275 7831196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01009 49 171 REM Transcription Factor Family AT1G49480 24.603 6.68e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre6g01009 B3 3.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01009 - - tpra:123887513 261.922