Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01008 ATGGCTAGAACAAATTCTACCATCCGTTTCTTCAAGATCATCCTCCAAACTAATCTTCAAAGACTTAAAATACCAAATAAGTTTACAAAGAGACGTGGAGTTGGTCTATCAAATCCAGTGTTGATCAAACCTCCTGATGGCACTAAATGGAAAGTTTATTGGAAAAAAGTCAATGGTGAGATTTGGTTTGAAAAGGGTTGGAAAAATTTTACTCAAAATTACTCTCTAGGATATGGCTCTTTGGTTTTGTTTAAATATAAAGAAGGAACTTCCAACTTCAATGTACTCATACTTGGCAAGAATGCAATGGAAATAGACTATGGCCCTTCATGTCACACTTATGATGAAGAAAATAACAATATTGATCATAGTGATGATGAATCAGTTATGATTTTGGATGAATTAAGTTCTCCCCGACCACATAAGAAAGTTAGAGGTGAGACTGAGACCGAGAACATTACTAAAAGAACTTCATCACTGAATATGCCAAAGGAAGCTAGAGCTCAGGAAATTGCAGAAAACTTCATCTCAAGCAATCCTTTTTTCACAATTCTTATAAAGCCTCACACGATCAAAAATCATCAGCTGGGTGTACCAAGTTTAAAAGGGGTTATTGAGAACAAAGCGAAGAATGTGATGCTGCAGATTGGAAAAAGATCATGGAATGTGAAATTGATCTATTGTAATGACAATAGAAATTGTCGACGCCTTTCGGCGGGTTGGCGCTTATTTGCAAGTGAAAGTGGACTGCAACCAGGAAATGTTTGTATCTTTGAAGTGATAAACAAGAAAAATTTAGTTTTTAAAGTTCATGTTTTCTAA 822 0.354 MARTNSTIRFFKIILQTNLQRLKIPNKFTKRRGVGLSNPVLIKPPDGTKWKVYWKKVNGEIWFEKGWKNFTQNYSLGYGSLVLFKYKEGTSNFNVLILGKNAMEIDYGPSCHTYDEENNNIDHSDDESVMILDELSSPRPHKKVRGETETENITKRTSSLNMPKEARAQEIAENFISSNPFFTILIKPHTIKNHQLGVPSLKGVIENKAKNVMLQIGKRSWNVKLIYCNDNRNCRRLSAGWRLFASESGLQPGNVCIFEVINKKNLVFKVHVF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01008 273 CDD B3_DNA 181 273 IPR003340 GO:0003677
Trre6g01008 273 MobiDBLite consensus disorder prediction 139 161 - -
Trre6g01008 273 CDD B3_DNA 9 98 IPR003340 GO:0003677
Trre6g01008 273 SUPERFAMILY DNA-binding pseudobarrel domain 177 273 IPR015300 -
Trre6g01008 273 Gene3D - 161 273 IPR015300 -
Trre6g01008 273 Gene3D - 2 102 IPR015300 -
Trre6g01008 273 PANTHER B3 DOMAIN-CONTAINING 5 272 - -
Trre6g01008 273 Pfam B3 DNA binding domain 181 271 IPR003340 GO:0003677
Trre6g01008 273 Pfam B3 DNA binding domain 17 97 IPR003340 GO:0003677
Trre6g01008 273 ProSiteProfiles B3 DNA-binding domain profile. 7 101 IPR003340 GO:0003677
Trre6g01008 273 SUPERFAMILY DNA-binding pseudobarrel domain 7 101 IPR015300 -
Trre6g01008 273 ProSiteProfiles B3 DNA-binding domain profile. 181 273 IPR003340 GO:0003677
Trre6g01008 273 SMART B3_2 10 101 IPR003340 GO:0003677
Trre6g01008 273 SMART B3_2 181 271 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01008 Trre-Chr6 7830275 7831840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01008 10 273 B3 DNA Binding Superfamily AT3G18990 25.672 2.47e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre6g01008 B3 1.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01008 - - tpra:123887513 444.121