Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01007 ATGGCTAAGACAAATGCTACTCTCTCCATCCGTTTCTTCAAGATCATCCTCCAAACAAATCTTCAAAGACTTAAAATACCAAATAAGTTTACAAAGAGACATGGAGTTGGTCTATCAAATCCAGTTTTGATCAATCCTCCTGATGGCACTAAATGGAAAGTGTATTGGAAAAACATCAATGGTGAGATTTGGTTTGAAAAGGGTTGGAAAGATTTTACTCAAAATTACTCTCTACAACAAGGTTGTTTGGTTTTGTTTAAATATAAAGAAGGAACTTCAAAGTTCGATGTACTCATACTTGGCCAAAATGCAGTAGAAATAGACTATGATCCTTCATCTGACACTGATGATGATCAAAATGACAATGTTGGTCATAGTGATGATGAATCAGTCGAGATTTTGGATGAAAAGGACAATGTTGATCATAGTGATGATGAATCGGTTCAGATTTTGGATGAATGGCTTAAAGGGAAGAACAAACAAAGATCACCAATAGATCGATCTCCTCGACCACATAAGAAAGTTAAAGGTGAGGCCGAGAACACTACTAAAAGAACTTCATCCTTGAATTGGCCAAAGGATGCTAAAGCTCGGAAAGTAACTGCAAAATTCAACTCATGCAATCCTTTTTTCACAATTGTCATAAAGCCTTATCATCTGATAAAAAGCCAGCTGCGTGTACCAAGTTTAAAAGGGGTTATTGAGAACAAAGAGAAGTATGTGAAGCTGCAGATTGGAAAAAGATCATGGAATGTGAAATTGCTTCATTGTAATGACAATAACTATGGTCGACGCCTTTCGGCGGGTTGGCACTTATTTGCAAGTGAAAATGGACTGCAACCAGGAAATGTTTGTATCTTTGAACTGATAAACAAGAAAAATTTAGTTTTTAAGGTTCATGTTTCCTAA 909 0.3619 MAKTNATLSIRFFKIILQTNLQRLKIPNKFTKRHGVGLSNPVLINPPDGTKWKVYWKNINGEIWFEKGWKDFTQNYSLQQGCLVLFKYKEGTSKFDVLILGQNAVEIDYDPSSDTDDDQNDNVGHSDDESVEILDEKDNVDHSDDESVQILDEWLKGKNKQRSPIDRSPRPHKKVKGEAENTTKRTSSLNWPKDAKARKVTAKFNSCNPFFTIVIKPYHLIKSQLRVPSLKGVIENKEKYVKLQIGKRSWNVKLLHCNDNNYGRRLSAGWHLFASENGLQPGNVCIFELINKKNLVFKVHVS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01007 302 SUPERFAMILY DNA-binding pseudobarrel domain 204 301 IPR015300 -
Trre6g01007 302 MobiDBLite consensus disorder prediction 118 144 - -
Trre6g01007 302 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Trre6g01007 302 PANTHER B3 DOMAIN-CONTAINING 10 299 - -
Trre6g01007 302 Gene3D - 192 302 IPR015300 -
Trre6g01007 302 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Trre6g01007 302 MobiDBLite consensus disorder prediction 158 188 - -
Trre6g01007 302 CDD B3_DNA 11 100 IPR003340 GO:0003677
Trre6g01007 302 ProSiteProfiles B3 DNA-binding domain profile. 210 302 IPR003340 GO:0003677
Trre6g01007 302 MobiDBLite consensus disorder prediction 109 144 - -
Trre6g01007 302 SMART B3_2 210 300 IPR003340 GO:0003677
Trre6g01007 302 SMART B3_2 12 103 IPR003340 GO:0003677
Trre6g01007 302 Pfam B3 DNA binding domain 19 96 IPR003340 GO:0003677
Trre6g01007 302 Pfam B3 DNA binding domain 210 299 IPR003340 GO:0003677
Trre6g01007 302 CDD B3_DNA 210 301 IPR003340 GO:0003677
Trre6g01007 302 Gene3D - 5 104 IPR015300 -
Trre6g01007 302 MobiDBLite consensus disorder prediction 158 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01007 Trre-Chr6 7827321 7829044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01007 12 299 B3 DNA Binding Superfamily AT3G18990 27.327 1.68e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre6g01007 B3 3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01007 - - tpra:123887513 415.616