Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01006 ATGGCTCAGAGAAATGCTACCTTACCAATCCGTTTCTTCAAGATCATCCTCCAAACTAATCTTCAAAGACTTAAAATACCAAATAAGTTTACAAAGAGACATGGAGTTGGTCTATCAAATCCAGTGTTGATAAATCCACCTGATGGCACTAAATGGAAAGTTTATTGGAAAAATATCAATGGGACTTCAAAATTCGATGTACACATACATGGCCAGAATGCAGTGGAAATAGACTATGGCCCTGCATGTCACACTTATGATGATGAAAATGACAATATTGATCATAGTGATGATGAATCGGTTGAGATTTTGGATGAAAAGGACAATGTTGATCATAGTGATGATGAATCAGTTATGATTTTGGATGAATTAAATTCTCCTCGACCGCATAAGAAAGTTAGAGGTGAGATTGAGAATTACACTACTAAAAGAACTTCATCCTTGAATTGGCCAAAGGAAGCTAAAGCTCAGAAAGTAAATTCAAAATTCAACTCGTGCTATCCTTTTTTCACAATTCTCATAAAGCCTTATCATCTGGTAAACTATTTTCTGCATGGTGTACCAAGTTTAAAAGGGGTTATTGAGAACAAAGAAAAGTATGTGAAGCTGCAGATTGAAAAAAGATCATGGAATGTGAAATTGCTCCCTTGTCGCGGCAGAAACAATGGTCGGCAGCTTTCGGCGGGTTGGTACTTGTTTGCTAGTGAAAATGGACTGCAACCTGGACATGTTTGTATCTTTGAACTGATAAACAAGAAAGATTTAGTTTTTAAAGTTCATGTTTTCTAA 789 0.3612 MAQRNATLPIRFFKIILQTNLQRLKIPNKFTKRHGVGLSNPVLINPPDGTKWKVYWKNINGTSKFDVHIHGQNAVEIDYGPACHTYDDENDNIDHSDDESVEILDEKDNVDHSDDESVMILDELNSPRPHKKVRGEIENYTTKRTSSLNWPKEAKAQKVNSKFNSCYPFFTILIKPYHLVNYFLHGVPSLKGVIENKEKYVKLQIEKRSWNVKLLPCRGRNNGRQLSAGWYLFASENGLQPGHVCIFELINKKDLVFKVHVF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01006 262 Gene3D - 7 69 IPR015300 -
Trre6g01006 262 SUPERFAMILY DNA-binding pseudobarrel domain 163 262 IPR015300 -
Trre6g01006 262 Gene3D - 150 262 IPR015300 -
Trre6g01006 262 ProSiteProfiles B3 DNA-binding domain profile. 208 262 IPR003340 GO:0003677
Trre6g01006 262 Pfam B3 DNA binding domain 197 262 IPR003340 GO:0003677
Trre6g01006 262 PANTHER B3 DOMAIN-CONTAINING 60 261 - -
Trre6g01006 262 SMART B3_2 169 260 IPR003340 GO:0003677
Trre6g01006 262 SUPERFAMILY DNA-binding pseudobarrel domain 11 79 IPR015300 -
Trre6g01006 262 CDD B3_DNA 169 262 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01006 Trre-Chr6 7822828 7826165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01006 122 262 B3 DNA Binding Superfamily AT3G18990 28.082 1.77e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre6g01006 B3 6.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01006 - - tpra:123887513 342.428