Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00993 ATGCAACCCAAGTCTGAAACTGCAAATCAACTGAGATCAGATCCTCATTCCTTTCAGCCCAGTGGTGTTTATTCTGAACCTTGGTGGCGTGGTGCTGGATACAATCCTGTGGCGCAATCAAAATCGATGTCTGGTGCCAATTCCTCCTCTCTTGATTGCCCCAATGGTGATTCGGAATCTAATGAGGAAGGTCAGTCTATGTCCAATAGTGCGATGAATGAGGAAGATGATGATGCCGCTAAGGATTCACAGCCTGCTGGTCCTAATCAGTCAGGAAATTATGGGCAAGAACAACAAGGAATGCAGAACACTGCATCATCTGCAGTTACTATTCGCGAAGAATGCCCCACACACACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCATATTACGGGGGCATGATGGCTGCTTATGGTCACCAGCCATTGGGATATCCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTCGAGATGGCTCAAGAACCTGTTTATGTGAACGCCAAACAATACCAGGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCCAGAAAGCCATATCTTCATGAATCTAGACATCAGCATGCTATGAGAAGGGCAAGAGGCACCGGAGGACGATTTGCAAAGAAAACTGATGGGGAGGGCTCAAACAACTCAGGAAAGGATAATGGCTCTGGTCCAGTCTTATCATCACAGTCAATTAGTTCATCTGGTTCAGAACCCTTGCCTTCTGACTCTGCCGAAACCTGGAACTCTCCCAACATGCGACAAGACGCAAGAGCATCAAATGAAAATGGTGGTTACCATAGTAACACCAATGGTGTGCAATCTTCAAGGTATCAAGGTGAAAGAGTGGATGATGGCGGAGACTGTTCAGGGCAGCTACGTGGAAGCATATCCTCGAACGAGGCATCGCAGAGGCGACTTGCAATCCAGTAG 1008 0.4702 MQPKSETANQLRSDPHSFQPSGVYSEPWWRGAGYNPVAQSKSMSGANSSSLDCPNGDSESNEEGQSMSNSAMNEEDDDAAKDSQPAGPNQSGNYGQEQQGMQNTASSAVTIREECPTHTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQPLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNNSGKDNGSGPVLSSQSISSSGSEPLPSDSAETWNSPNMRQDARASNENGGYHSNTNGVQSSRYQGERVDDGGDCSGQLRGSISSNEASQRRLAIQ 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00993 335 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 230 IPR001289 GO:0003700|GO:0006355
Trre6g00993 335 MobiDBLite consensus disorder prediction 1 20 - -
Trre6g00993 335 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Trre6g00993 335 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Trre6g00993 335 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Trre6g00993 335 MobiDBLite consensus disorder prediction 37 73 - -
Trre6g00993 335 Gene3D - 173 235 - -
Trre6g00993 335 MobiDBLite consensus disorder prediction 1 108 - -
Trre6g00993 335 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Trre6g00993 335 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 294 IPR001289 GO:0003700|GO:0006355
Trre6g00993 335 MobiDBLite consensus disorder prediction 84 108 - -
Trre6g00993 335 MobiDBLite consensus disorder prediction 208 227 - -
Trre6g00993 335 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Trre6g00993 335 MobiDBLite consensus disorder prediction 317 335 - -
Trre6g00993 335 MobiDBLite consensus disorder prediction 206 335 - -
Trre6g00993 335 MobiDBLite consensus disorder prediction 235 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00993 Trre-Chr6 7690423 7692741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00993 16 275 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.924 2.55e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre6g00993 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00993 K08064 - gmx:100808378 507.294