Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00991 ATGAAGACGAAGATCTCCCAAAACTGCAATAGTGCATTGGCGTATGTCAAGGCAGTAGAAGTTACCTTTCAACGTGATAGGAAAAAGTATGACGAGTTTTTAAGAATCGTATTAGATTTGAATTTGAGGAGGAGTGGAAAAAGAAGAATTGCTACAAGAGTGAAGAGTTTGTTTGAAGAGAATTCAGATTTAATTTTGGGATTCAACACCTTTTTGTTGCCAGAGGAATATCAAATCACACTTCCTCGTAGGACTGGGAAAAATGTGAAGAAGGTAGAAGAAAATTGTGTACTTCCTTGGGATGTGCTTGATATCATTGCCAAAAGACTAGATTTTGATGACCTCTTCAACTTTGCTGGTGTGTGCAAGAATTGGAGGGCTTTTCACAAAACTAATTGGAGAAATTTCACATCCCAAGAACCATTACTTCTAGAATCATCATATGATTGTGGTAGATCATATACGCTTAGTAGCATATCTGAGCAAAAAGTGTATTGCTTGAAGATTAAGAAGTGCTTCATCTCCTCTTACTATCGTGTTACGTCTTCTAGCGGATATATTATCATGACGGGGGACAATAATTCATTTCTCTTGATCAATCCATTTACAAGAATAAATAAGATAATCAATACATCTGAAATTAAGCCTGGTTTTGCCAACGACCATGCCTTGCTTGCTTTCGGAAAATGTTCTGAGGAATTTGTCTTGGTGGTTTTATGTGATTATGAGATTTTGAATGTCTATCAATCTCGAAATTGTGGTTGGGTTACTTATTCAACAATGGAAAATCAAGGGAGGGTTGTTGACTTTGTGGTTTTTCATAATAAGATATATGTTATTACTAACCAGGCCAACATAGGGATACTCAACTTGAATTCTACAAATATTAAATTTTTAAAACTGAAGAGTACTCCTAAGGCGAAAATTCCTGTATACTGTCGTTGGTTGGTTTCTTGCGACGAGCAACTTTTAATGGTTGATTTTACAAGCAGCAACACGTTACCGAATGTGTACAAGATAGACTTCTCAACTATGAATTATGTCAAACTGAAAACTTTGGGCGACATTGCATTATTTTATGTTGAAGGCAAAAGTTGTTATGCATTGAGTGACCCAAATAGATGGGGATATCAGAGCAATTCTGTCTATATTGTTAGTCGTACAACCGCTCCAAGATGTACAATGTATTCTTGGGATGATAAAAATTTGCAAAAAGACATGACACTTCCATCTCATGCTTCTCGAAAATATCCCTTTATGCACAGTTGGTTCTTTGGACATCTAAGGTATGAGGTAGATTATTCTCTTGTTGAGTAA 1317 0.3599 MKTKISQNCNSALAYVKAVEVTFQRDRKKYDEFLRIVLDLNLRRSGKRRIATRVKSLFEENSDLILGFNTFLLPEEYQITLPRRTGKNVKKVEENCVLPWDVLDIIAKRLDFDDLFNFAGVCKNWRAFHKTNWRNFTSQEPLLLESSYDCGRSYTLSSISEQKVYCLKIKKCFISSYYRVTSSSGYIIMTGDNNSFLLINPFTRINKIINTSEIKPGFANDHALLAFGKCSEEFVLVVLCDYEILNVYQSRNCGWVTYSTMENQGRVVDFVVFHNKIYVITNQANIGILNLNSTNIKFLKLKSTPKAKIPVYCRWLVSCDEQLLMVDFTSSNTLPNVYKIDFSTMNYVKLKTLGDIALFYVEGKSCYALSDPNRWGYQSNSVYIVSRTTAPRCTMYSWDDKNLQKDMTLPSHASRKYPFMHSWFFGHLRYEVDYSLVE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00991 438 ProSiteProfiles PAH domain profile. 1 75 IPR003822 GO:0006355
Trre6g00991 438 ProSiteProfiles F-box domain profile. 98 136 IPR001810 GO:0005515
Trre6g00991 438 CDD F-box_SF 98 128 - -
Trre6g00991 438 SMART fbox_2 98 136 IPR001810 GO:0005515
Trre6g00991 438 Pfam F-box domain 98 127 IPR001810 GO:0005515
Trre6g00991 438 SUPERFAMILY F-box domain 96 173 IPR036047 GO:0005515
Trre6g00991 438 Gene3D Paired amphipathic helix 11 72 IPR036600 GO:0006355
Trre6g00991 438 Pfam Paired amphipathic helix repeat 29 72 IPR003822 GO:0006355
Trre6g00991 438 PANTHER OS09G0392200 PROTEIN 70 427 IPR044619 -
Trre6g00991 438 Gene3D - 96 133 - -
Trre6g00991 438 SUPERFAMILY PAH2 domain 4 74 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00991 Trre-Chr6 7659519 7662435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00991 10 81 WRKY Transcription Factor Family AT4G12020 43.056 1.32e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre6g00991 PAH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00991 - - tpra:123915142 674.47