Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00967 ATGACATCCTACTCGCGCAGATCAAGGTATTCTGCCTCTCCCTCTCCATCGCCATCTCCATACAGGCGATACAGTAGGTCTTTGTCCAGGTCTCTATCAAGGTCCATATCCAGAAGCCGTTCGAGGAGCACATCCCGAGATGCAGAAAATCCGGGAAACAATCTGTATGTGACAGGACTGTCTCCTAGGATTACCAAGAGAGAACTGGAAAAGCATTTTGCTACTGAGGGAAAAGTTGTAGATGTCCATCTGGTTGTTGATCCATGGACAAGGGAGTCGCGTGGTTTTGGATTTGTGACAATGGCGACTTTAGAAGAAGCTGATCGATGTGTGAAGTATCTGGATCGCTCTGTACTTGAAGGGCGTGTTATCATGGTGGAGAAGGCTAGAAGACGACGCGGTCGAACTCCGACACCTGGGAAATATCTGGGTCTCAGGACTATTCGAGGACGGCGTCGCTCTCCAAGCTACTCTCCTCGTCGTTCTCCTAGCTATTCTCCCTATAGAAGAAGCTACAGTCGTTCATCTTATTCTTCAGATCGTAGTCGGAGTCGCTCATACTCGCCTGAGTACAGGCGAAGAAGGACCTACTCTCCTGACTACAGGCGAAGGAGGGCATACTCGCCATACTATAGTCGACGCAGGTCATACAGGTCATACTATCGTTATGACCGGCACAAGTCATATTCTCGGTCTCGCACTCCTTACAGCAGGTCTCCTGTCAGCATGCGTGACAGATCATACTCTCCCTATGGCTCCAGATACGATTCACCTGATGATAGCTACTATAGAAGGTACCGTTACAGATCGGTTTCTCGAAGTGTCTCACCCAGGCCAAGGAGGTCAAGGAGGAGCTACTCGCGGAGTGTCTCTCCTGTTCAAAGTGTCTCCCCCAGGCCAAGGAAGAGATCAGGAAGGAGTCATTCAAGAAGCTCTAGAAGGAGTGGTGGTTATTACAAATGTAAGCATTCTCGATCAAGAAGCTCAAGTGTGAGTGCTAGTTCCAGATCATTTTCAAGGTCCAACACTCCCGGATCTACCTCTCCTTCAAATTGA 1056 0.4905 MTSYSRRSRYSASPSPSPSPYRRYSRSLSRSLSRSISRSRSRSTSRDAENPGNNLYVTGLSPRITKRELEKHFATEGKVVDVHLVVDPWTRESRGFGFVTMATLEEADRCVKYLDRSVLEGRVIMVEKARRRRGRTPTPGKYLGLRTIRGRRRSPSYSPRRSPSYSPYRRSYSRSSYSSDRSRSRSYSPEYRRRRTYSPDYRRRRAYSPYYSRRRSYRSYYRYDRHKSYSRSRTPYSRSPVSMRDRSYSPYGSRYDSPDDSYYRRYRYRSVSRSVSPRPRRSRRSYSRSVSPVQSVSPRPRKRSGRSHSRSSRRSGGYYKCKHSRSRSSSVSASSRSFSRSNTPGSTSPSN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00967 351 CDD RRM_SF 55 127 - -
Trre6g00967 351 MobiDBLite consensus disorder prediction 301 321 - -
Trre6g00967 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Trre6g00967 351 Gene3D - 3 137 IPR012677 -
Trre6g00967 351 MobiDBLite consensus disorder prediction 286 300 - -
Trre6g00967 351 MobiDBLite consensus disorder prediction 1 59 - -
Trre6g00967 351 MobiDBLite consensus disorder prediction 130 210 - -
Trre6g00967 351 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 43 320 - -
Trre6g00967 351 MobiDBLite consensus disorder prediction 1 39 - -
Trre6g00967 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
Trre6g00967 351 MobiDBLite consensus disorder prediction 157 184 - -
Trre6g00967 351 SMART rrm1_1 54 127 IPR000504 GO:0003723
Trre6g00967 351 MobiDBLite consensus disorder prediction 322 351 - -
Trre6g00967 351 SUPERFAMILY RNA-binding domain, RBD 42 156 IPR035979 GO:0003676
Trre6g00967 351 FunFam Serine/arginine-rich splicing factor SR45a 3 137 - -
Trre6g00967 351 MobiDBLite consensus disorder prediction 222 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00967 Trre-Chr6 7446826 7449369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00967 54 135 Eukaryotic Initiation Factors Gene Family AT2G36660 34.146 2.90e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00967 - - mtr:25490768 242.276