Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00963 ATGGAGCCCTCTCACCATCCAACACCGCCGGCGCCGGTGGTAGTGAAACAAGAACCGATCAGAAACCAGGAGCAATCACCCTCACCACTGTTTCCGACTCCAGAATCACCAATCATCGATCGAAAGCCAAAATTATGCGGTATATGCTTTGTTTTCAAAAACGATTATAATATGTTCAAAGAAAAAAGCTGCAACCATCAATGTTGTGTTGATTGTATTTCACAATACGTGGTTTCTGAAATTAACAACAAAGTTGTTAAGGTGTATTGTCCAATTCCAAATTGTTTTGTGAAATTGAAGAGAGAAAATTTGCAATATATTTTGCCAAAAGAAACTAGTGATAAATGGGAATTAGCTAAGTATGTGTCTAAAATTGAGTTGGAGCAAAAGACTTATTGTCCGTTTAAGGATTGTTCGGTTTTGTTGGTGAATGATGGTGGAGAAGTTGTTACTAGCTGCGAGTGTCCGTTTTGTCATAGGTTATTTTGCGCGCAATGTAAGGTTCCGTGGCACGGTAATATGAGTTGCGCGGAATTTCGAATGTCGAGAAGTGTTAAAGTTGAACCAGGTTTGGATGCTGAAGTTTAG 588 0.3946 MEPSHHPTPPAPVVVKQEPIRNQEQSPSPLFPTPESPIIDRKPKLCGICFVFKNDYNMFKEKSCNHQCCVDCISQYVVSEINNKVVKVYCPIPNCFVKLKRENLQYILPKETSDKWELAKYVSKIELEQKTYCPFKDCSVLLVNDGGEVVTSCECPFCHRLFCAQCKVPWHGNMSCAEFRMSRSVKVEPGLDAEV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00963 195 CDD BRcat_RBR_unk 129 179 - -
Trre6g00963 195 SMART ibrneu5 114 176 IPR002867 GO:0008270
Trre6g00963 195 ProSiteProfiles Zinc finger RING-type profile. 46 94 IPR001841 -
Trre6g00963 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 126 IPR013083 -
Trre6g00963 195 SUPERFAMILY RING/U-box 43 123 - -
Trre6g00963 195 SUPERFAMILY RING/U-box 124 180 - -
Trre6g00963 195 ProSiteProfiles TRIAD supradomain profile. 42 195 IPR044066 -
Trre6g00963 195 MobiDBLite consensus disorder prediction 1 34 - -
Trre6g00963 195 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 180 IPR031127 GO:0004842|GO:0016567
Trre6g00963 195 Pfam IBR domain, a half RING-finger domain 121 176 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00963 Trre-Chr6 7401634 7402221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00963 40 184 C3H Transcription Factor Family AT2G19610 25.325 3.54e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00963 K11975 - mtr:25481406 215.698