Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00962 ATGAAGCATTCACTCTCGAAGAAACCAGCTACAGACAAAATCACGAAGCACTCACCCTCGGCGCCGCCGTCTGTGAAACAAGAACCTATCACGAAGCATTCACTCTCGGAACGTAAAACGACGAAGAGAAAATCTCTTTCAGAAATCAATGATGAAAGGAAGAAGAAGAAACCAGCCACAGTGATTGGTAGTAGTTCACAATCACCAATCATCCTTGACGACAACAAGCAAGAAAGATTCACAAAGATGATCGGTGGAGAATCTTCGAAAAGTTCATGTGGTATATGCTTTGAATTCATAACAGATTCTGATATGTTCAAAAGAAAAAGATGCAACCACTTATTTTGTGTTGATTGTATTTCCAAATATGTGGATTCTCAAATTAGCAATAATGTGGTTAAGATATTTTGTCCAACTCCTAATTGCTCCGCGAAATTGGAGCCGAGACATTTACAAAACATTATGCCTAGAGAATTTATCGATCGATGGGAAATCGCGAAGTATGAGTCTAAAATTTCGTTGGACCAAAAGACTTATTGTCCGTTTAAGAATTGTTCGATTTTGTTGGTTGATGATAATGACAGCAGAGAAGTTGTGACTAGCTGCGAGTGTCCGGCTTGTCATAGGTTATTTTGTGCGCAATGTAAAGTTCCGTGGCACGCGGAGATGAGGTGTTGGGAGTTTCAAAATTCGAAACGCGATAAAAATGAACAAGATTTAGATGATAAGTTTTTGGATTTGGCTAGGAGAAAGAAGTGGCAGAGATGTCCAAATTGCTCTATTTATGTCAAGAGAAGAAGTGGATGTGAACATATGAAATGCAGGTGTAAGTGTAGCTTCTGCTACCATTGTGGGAAGAAATGGAAGAGTGGACATACATGCAATAGAAGACATTCTTGA 900 0.3922 MKHSLSKKPATDKITKHSPSAPPSVKQEPITKHSLSERKTTKRKSLSEINDERKKKKPATVIGSSSQSPIILDDNKQERFTKMIGGESSKSSCGICFEFITDSDMFKRKRCNHLFCVDCISKYVDSQISNNVVKIFCPTPNCSAKLEPRHLQNIMPREFIDRWEIAKYESKISLDQKTYCPFKNCSILLVDDNDSREVVTSCECPACHRLFCAQCKVPWHAEMRCWEFQNSKRDKNEQDLDDKFLDLARRKKWQRCPNCSIYVKRRSGCEHMKCRCKCSFCYHCGKKWKSGHTCNRRHS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00962 299 Gene3D - 223 299 - -
Trre6g00962 299 ProSiteProfiles TRIAD supradomain profile. 89 299 IPR044066 -
Trre6g00962 299 SMART ibrneu5 161 225 IPR002867 GO:0008270
Trre6g00962 299 SMART ibrneu5 234 294 IPR002867 GO:0008270
Trre6g00962 299 SUPERFAMILY RING/U-box 244 295 - -
Trre6g00962 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 176 IPR013083 -
Trre6g00962 299 ProSiteProfiles Zinc finger RING-type profile. 93 141 IPR001841 -
Trre6g00962 299 ProSitePatterns Zinc finger RING-type signature. 111 120 IPR017907 -
Trre6g00962 299 SUPERFAMILY RING/U-box 89 170 - -
Trre6g00962 299 SUPERFAMILY RING/U-box 173 230 - -
Trre6g00962 299 MobiDBLite consensus disorder prediction 1 68 - -
Trre6g00962 299 Pfam Ring finger domain 92 139 IPR001841 -
Trre6g00962 299 Pfam IBR domain, a half RING-finger domain 248 294 IPR002867 GO:0008270
Trre6g00962 299 Pfam IBR domain, a half RING-finger domain 162 225 IPR002867 GO:0008270
Trre6g00962 299 CDD Rcat_RBR_unk 252 288 - -
Trre6g00962 299 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 18 294 IPR031127 GO:0004842|GO:0016567
Trre6g00962 299 CDD BRcat_RBR_unk 175 228 - -
Trre6g00962 299 FunFam RBR-type E3 ubiquitin transferase 88 174 - -
Trre6g00962 299 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00962 Trre-Chr6 7395912 7396904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00962 59 285 C3H Transcription Factor Family AT2G19610 29.237 2.52e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00962 K11975 - mtr:25481406 426.402