Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00961 ATGAAACACTCACTTTCGACGCCGGTAGAGAAAAAACAACCGATCATGAAGCATTCACTCTCGAAGAAACCAGCTACAGACAAAATCACGAAGCACTCACCCTCGGCGCCGCCGTCTGTGAAACAAGAACCTATCACGAAGCATTCACTCTCGGAACGTAAAACGACGAAGAGAAAATCTCTTTCAGAAATCAATGATGAAAGGAAGAAGAAGAAACCAGCCACAGTGATTGGTAGTAGTTCACAATCACCAATCATCCTTGACGACAACAAGCAAGAAAGATTCACAAAGATGATCGGTGGAGAATCTTCGAAAAGTTCATGTGGTATATGCTTTGAATTCATAACAGATTCTGATATGTTCAAAAGAAAAAGATGCAACCACTTATTTTGTGTTGATTGTATTTCCAAATATGTGGATTCTCAAATTAGCAATAATGTGGTTAAGATATTTTGTCCAACTCCTAATTGCTCCGCGAAATTGGAGCCGAGACATTTACAAAACATTATGCCTAGAGAATTTATCGATCGATGGGAAATCGCGAAGTATGAGTCTAAAATTTCGTTGGACCAAAAGACTTATTGTCCGTTTAAGAATTGTTCGATTTTGTTGGTTGATGATAATGACAGCAGAGAAGTTGTGACTAGCTGCGAGTGTCCGGCTTGTCATAGGTTATTTTGTGCGCAATGTAAAGTTCCGTGGCACGCGGAGATGAGGTGTTGGGAGTTTCAAAATTCGAAACGCGATAAAAATGAACAAGATTTAGATGATAAGTTTTTGGATTTGGCTAGGAGAAAGAAGTGGCAGAGATGTCCAAATTGCTCTATTTATGTCAAGAGAAGAAGTGGATGTGAACATATGAAATGCAGGTGTAAGTGTAGCTTCTGCTACCATTGTGGGAAGAAATGGAAGAGTGGACATACATGCAATAGAAGACATTCTTGA 945 0.3947 MKHSLSTPVEKKQPIMKHSLSKKPATDKITKHSPSAPPSVKQEPITKHSLSERKTTKRKSLSEINDERKKKKPATVIGSSSQSPIILDDNKQERFTKMIGGESSKSSCGICFEFITDSDMFKRKRCNHLFCVDCISKYVDSQISNNVVKIFCPTPNCSAKLEPRHLQNIMPREFIDRWEIAKYESKISLDQKTYCPFKNCSILLVDDNDSREVVTSCECPACHRLFCAQCKVPWHAEMRCWEFQNSKRDKNEQDLDDKFLDLARRKKWQRCPNCSIYVKRRSGCEHMKCRCKCSFCYHCGKKWKSGHTCNRRHS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00961 314 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 309 IPR031127 GO:0004842|GO:0016567
Trre6g00961 314 ProSiteProfiles TRIAD supradomain profile. 104 314 IPR044066 -
Trre6g00961 314 SUPERFAMILY RING/U-box 259 310 - -
Trre6g00961 314 ProSitePatterns Zinc finger RING-type signature. 126 135 IPR017907 -
Trre6g00961 314 CDD BRcat_RBR_unk 190 243 - -
Trre6g00961 314 MobiDBLite consensus disorder prediction 15 29 - -
Trre6g00961 314 CDD Rcat_RBR_unk 267 303 - -
Trre6g00961 314 Pfam IBR domain, a half RING-finger domain 263 309 IPR002867 GO:0008270
Trre6g00961 314 Pfam IBR domain, a half RING-finger domain 177 240 IPR002867 GO:0008270
Trre6g00961 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 188 IPR013083 -
Trre6g00961 314 MobiDBLite consensus disorder prediction 46 74 - -
Trre6g00961 314 SUPERFAMILY RING/U-box 188 245 - -
Trre6g00961 314 MobiDBLite consensus disorder prediction 1 82 - -
Trre6g00961 314 FunFam RBR-type E3 ubiquitin transferase 103 189 - -
Trre6g00961 314 Pfam Ring finger domain 107 154 IPR001841 -
Trre6g00961 314 Gene3D - 238 314 - -
Trre6g00961 314 ProSiteProfiles Zinc finger RING-type profile. 108 156 IPR001841 -
Trre6g00961 314 SMART ibrneu5 249 309 IPR002867 GO:0008270
Trre6g00961 314 SMART ibrneu5 176 240 IPR002867 GO:0008270
Trre6g00961 314 SUPERFAMILY RING/U-box 104 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00961 Trre-Chr6 7395867 7396904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00961 74 300 C3H Transcription Factor Family AT2G19610 29.237 2.56e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00961 K11975 - mtr:25481406 426.402