Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00957 ATGAAAAAAGCTTCAACCACTAGTACTTATTCTCAAGGTCAATCTCCAAAAAGCTTATGCGGTATATGTCTTGATTCAGTAATAGACTCTCAAATTTTCAGAAACGGTTCATGCAATCATCCCTTCTGTACTAAATGCATATCCAAGTATGTGACAGTTAAAAGAAAAGAAAACGTGGCAAAAGTGAATTGTCCACATCCAAATTGTTCTGTTGAACTCAAACCAGAACATTTGCAATCTATTTTACCTAAAAAAATCATTGTTGATTGGGAATCTGCAATATATGAGTCTTCTATATCTTTGAGGAAAAAAATCTATTGCCCTTATAATAATTGTTCTCTTTTGTTGGTGAATGATGAGGCAGAGAAATCTACAAGTTGCGAATGTCCTTCTTGTCATAGGCTATTCTGTGCACAATGTAAAGTTCCATGGCATGCAGATATGTGTTGCAGGAAATTTCAGAAGTTAAAAAATGTTTCAGATAAAGAACAACGGTTGGATTAG 504 0.3413 MKKASTTSTYSQGQSPKSLCGICLDSVIDSQIFRNGSCNHPFCTKCISKYVTVKRKENVAKVNCPHPNCSVELKPEHLQSILPKKIIVDWESAIYESSISLRKKIYCPYNNCSLLLVNDEAEKSTSCECPSCHRLFCAQCKVPWHADMCCRKFQKLKNVSDKEQRLD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00957 167 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 10 162 IPR031127 GO:0004842|GO:0016567
Trre6g00957 167 SUPERFAMILY RING/U-box 101 155 - -
Trre6g00957 167 FunFam RBR-type E3 ubiquitin transferase 15 101 - -
Trre6g00957 167 ProSiteProfiles Zinc finger RING-type profile. 20 65 IPR001841 -
Trre6g00957 167 SUPERFAMILY RING/U-box 17 98 - -
Trre6g00957 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 100 IPR013083 -
Trre6g00957 167 ProSiteProfiles TRIAD supradomain profile. 16 167 IPR044066 -
Trre6g00957 167 Pfam Zinc finger, C3HC4 type (RING finger) 20 65 IPR018957 GO:0046872
Trre6g00957 167 ProSitePatterns Zinc finger RING-type signature. 38 47 IPR017907 -
Trre6g00957 167 SMART ibrneu5 88 150 IPR002867 GO:0008270
Trre6g00957 167 Pfam IBR domain, a half RING-finger domain 96 150 IPR002867 GO:0008270
Trre6g00957 167 CDD BRcat_RBR_unk 104 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00957 Trre-Chr6 7384842 7385345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00957 5 155 C3H Transcription Factor Family AT2G19610 24.375 1.27e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00957 K11975 - mtr:25490784 251.136