Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00956 ATGCATGTAGAAAAATCTTGGGGGTGTCTACACATGACCTGCAGATGTGGCTGTTGCTTCTGTTACGGCTGTGGTGGGGAGTGGAGTTCTGTACATAGGTGCAAACAATATACTACTGATCATAGATGCGCGATTGGAATTATACACTTCATGTTGGGTGTGGTTGCTACTTCTGCTACATCTGTGGGGGGGATTGGAGTTCTAGACATATGTGCAAACAACTTGCTGAAATGCTTAATATTGGGTGTTCTGTTTGGAACACGCCTAATAATAGGCATATGCTTTATTTTATACCAAGCTCAAAGAGGCAAGCTCAAAGGGCTGAAACATGAACTCAAAACTGGGAAGGAATAA 354 0.4266 MHVEKSWGCLHMTCRCGCCFCYGCGGEWSSVHRCKQYTTDHRCAIGIIHFMLGVVATSATSVGGIGVLDICANNLLKCLILGVLFGTRLIIGICFILYQAQRGKLKGLKHELKTGKE 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00956 117 SUPERFAMILY RING/U-box 2 39 - -
Trre6g00956 117 Gene3D - 1 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00956 Trre-Chr6 7379279 7384787 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00956 3 40 C3H Transcription Factor Family AT2G31760 47.500 6.05e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00956 K11975 - mof:131158056 48.1358