Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00955 ATGCATCAAAACCACACTCCTCCCATGATTATGACTCGAACTCGTTCTGCTCTTTTAGCAAAGGAAACCATAGCAATGAAGAAGAGAAAATCTCTCACAGAAAATCAAAGGTATGAAAAGTACAACAAGAACAAGAAACAAGCAACAACTACTAGGAATATCAAAACTAACAAACCAAACAAAGGTCAATCCTCAAAAAGCTTCACATGTGGTATATGTTTTGATTCTGTAAAAGTTTCTAAAATATTCACAAACACTTCATGCAATCATCCTTTTTGTACTGTATGCATATCTAAGTATGTCAATGTTCAAAGAAAAGACAAAGTGGTGAAACTGAATTGGCCAAATCCAACATGTTCTGTTGAACTCAAACCAGAACATTTACAATCTATTTTATCTAAAAAAGTTATCATTGATTGGGAATCTGCGATTTACGAGTCTGAAATTTGTTTGAAGGAAAAAATTTACTGTCCTTATAAGAATTGTTCACTTTTATTGGTGAACGACGAAGCCGAGGTTGTTACGAGCTGTCAATGTCCTTCTTGTCATAGGTTATTCTGTGCACAATGTAAAGTTCCATGGCACGCGGATATGAGTTGTCGGGAATTTCTTGATTTGAAAAATGGTCGAGATGAGAAAAATTTGGAAAAGAAATTTTTAGCTTTGGCTAAAAAGAAAAAGTGGCAGAAATGTCCTAAATGTTGTATGCATGTTCAGAGAAATGGTGGATGTGAACACATTTCATGCAGGTGTGGATGTAACTTCTGCTACAAGTGTGGTAAGGATTGGAGTCGTGGACATACATGTAATGTTACATCACCTATATTATAA 831 0.3502 MHQNHTPPMIMTRTRSALLAKETIAMKKRKSLTENQRYEKYNKNKKQATTTRNIKTNKPNKGQSSKSFTCGICFDSVKVSKIFTNTSCNHPFCTVCISKYVNVQRKDKVVKLNWPNPTCSVELKPEHLQSILSKKVIIDWESAIYESEICLKEKIYCPYKNCSLLLVNDEAEVVTSCQCPSCHRLFCAQCKVPWHADMSCREFLDLKNGRDEKNLEKKFLALAKKKKWQKCPKCCMHVQRNGGCEHISCRCGCNFCYKCGKDWSRGHTCNVTSPIL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00955 276 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 36 263 IPR031127 GO:0004842|GO:0016567
Trre6g00955 276 MobiDBLite consensus disorder prediction 31 46 - -
Trre6g00955 276 Pfam Zinc finger, C3HC4 type (RING finger) 70 103 IPR018957 GO:0046872
Trre6g00955 276 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Trre6g00955 276 ProSiteProfiles TRIAD supradomain profile. 66 276 IPR044066 -
Trre6g00955 276 MobiDBLite consensus disorder prediction 31 65 - -
Trre6g00955 276 Gene3D - 198 274 - -
Trre6g00955 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 151 IPR013083 -
Trre6g00955 276 SUPERFAMILY RING/U-box 65 147 - -
Trre6g00955 276 SUPERFAMILY RING/U-box 149 204 - -
Trre6g00955 276 MobiDBLite consensus disorder prediction 47 65 - -
Trre6g00955 276 Pfam IBR domain, a half RING-finger domain 148 200 IPR002867 GO:0008270
Trre6g00955 276 SUPERFAMILY RING/U-box 218 271 - -
Trre6g00955 276 CDD BRcat_RBR_unk 152 203 - -
Trre6g00955 276 ProSiteProfiles Zinc finger RING-type profile. 70 120 IPR001841 -
Trre6g00955 276 SMART ibrneu5 213 269 IPR002867 GO:0008270
Trre6g00955 276 SMART ibrneu5 138 200 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00955 Trre-Chr6 7376642 7377618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00955 69 260 C3H Transcription Factor Family AT2G19610 28.713 1.49e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00955 K11975 - tpra:123915135 379.022