Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00949 ATGAAGTGGGAAATGGAAATTCTTTCACCTAATTCTCATCCTCATACACCATTTGTTCAAAATTCAAACAATACCAACAATTGGTTTTTGCAAGATAGTAGTAACAGCATCATTAACAGGAACACAAAATGGACTCCTGCAGAGAACAAATTGTTTGAAAATGCTCTTGCAGTTTACGATAAGGATACGCCGGATCGGTGGCAGAAAGTAGCTGAAATGATACCTGGAAAGAGTGTTGTTGATGTTATGAATCAGTATAAGGAATTGGAAGCTGATGTTTGTAACATAGAAGCTGGTTTAATTCCAATTCCTGGGTATAGTACTAGTATTACTAGTACTACTTCACCTTTTACCTTAGATTGGGTGAATTCTTCTGGTTATGATGGTTTTAGAGGAATCAATTCAAAGAGAGGCTCTTCTGGTAGATCTCCTGATCAAGAAAGGAAAAAAGGTGTACCATGGACTGAAGAAGAACACAAGTTATTTCTATTGGGTTTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATTTCAAGGAATTTTGTGATCACAAGAACACCAACACAAGTAGCAAGCCATGCTCAGAAATATTTCATAAGACAACTTTCTGGTGGCAAAGACAAAAGAAGAGCTAGCATTCATGACATAACAACAGTTAATCTCACAGAAACTTCTAGAACTTCACCAAATTCAGAAGACGCAAAAAGATCATCCACTTCACCAAACCATAACAATTCAATGAATATCAACAAGTATTCAACTGTTAACACTTCATCTGAGATGCATTTTCAGCCAGCTATGACAGCATTCAATCCTGCAACACATGAACAAATTTTCATGTCTCCTTATGGAGTTAATAATAACTCTTATGGATTTAAAATGCAGCAGAGTCAAAATATGCATAGAAATCCTCTTCATGAGTCTTCTTACTTTGCACCTCAGACACAAAACATGGTTTTCCAAATGCAATCTTCTCAACAACACTATTCACATGCATGA 999 0.3604 MKWEMEILSPNSHPHTPFVQNSNNTNNWFLQDSSNSIINRNTKWTPAENKLFENALAVYDKDTPDRWQKVAEMIPGKSVVDVMNQYKELEADVCNIEAGLIPIPGYSTSITSTTSPFTLDWVNSSGYDGFRGINSKRGSSGRSPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSRTSPNSEDAKRSSTSPNHNNSMNINKYSTVNTSSEMHFQPAMTAFNPATHEQIFMSPYGVNNNSYGFKMQQSQNMHRNPLHESSYFAPQTQNMVFQMQSSQQHYSHA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00949 332 CDD SANT 153 198 IPR001005 -
Trre6g00949 332 Gene3D - 36 103 - -
Trre6g00949 332 ProSiteProfiles Myb-like domain profile. 146 198 IPR001005 -
Trre6g00949 332 Gene3D - 152 202 - -
Trre6g00949 332 FunFam transcription factor MYB1R1 152 203 - -
Trre6g00949 332 NCBIfam myb-like DNA-binding domain, SHAQKYF class 149 201 IPR006447 GO:0003677
Trre6g00949 332 Pfam Myb-like DNA-binding domain 43 88 IPR001005 -
Trre6g00949 332 Pfam Myb-like DNA-binding domain 153 198 IPR001005 -
Trre6g00949 332 SUPERFAMILY Homeodomain-like 148 201 IPR009057 -
Trre6g00949 332 MobiDBLite consensus disorder prediction 133 154 - -
Trre6g00949 332 ProSiteProfiles SANT domain profile. 154 202 IPR017884 -
Trre6g00949 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 202 IPR017930 -
Trre6g00949 332 FunFam Transcription factor SRM1 37 103 - -
Trre6g00949 332 MobiDBLite consensus disorder prediction 218 250 - -
Trre6g00949 332 SUPERFAMILY Homeodomain-like 42 97 IPR009057 -
Trre6g00949 332 SMART sant 150 200 IPR001005 -
Trre6g00949 332 SMART sant 40 92 IPR001005 -
Trre6g00949 332 CDD SANT 43 89 IPR001005 -
Trre6g00949 332 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 40 303 IPR043363 -
Trre6g00949 332 ProSiteProfiles Myb-like domain profile. 40 90 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00949 Trre-Chr6 7306069 7307544 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g00949 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00949 - - cam:101514273 516.538