Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00947 ATGGCTCCTATACTTGGACATGCATTATCTCATATAGTACTCATCCTTATTATTGGTTTCCTAGTGATCCCTTCTTCTTGTTTTAATCCCAAGAAGTTAGTTAATGTAACTTCATACTCCTCATCTCATTCAGATTGGTCATCTTCAGTGGCCACTTGGTATGGAGATGCCAACGGTGATGGAAGTGAAGCTGGTGCTTGTGGATATGGAAATGCAGTTGGGGAACCTCCATTCTTTTCAATGATATCGGCCGGAAGTCCTCTTATCTATAACTTGGGGAAAGGTTGTGGTTCTTGTTATGAGGTGAAGTGCACTGAAAATTCTGCATGCCCAGGCAATCCTGTGAGTGTGGTTATCACTGATGAGTGTGCTGAATGTGGCTCAGATGCTCAATATCATTTTGATTTGAGTGGCACTGCTTTTAGTTCCATGGCAATTTCAGGTAGAAATGAAGAGCTACGCTATGCTGGGAAACTAGCCATTCAACATAGAAGAGTTGCATGCAACTACCCTGATATGTCAGTAGCTTTCCATGTGGACGATGGATCCAACCAAGAATATTTTGCTATCTTAATTGAATATGTGAATGGGGATGGTGATCTTAACAAAGTTGAACTCATGGAAGGAATTGAATCAGCCTCTTGGAATACCATGAAACAATCATGGGGTGCTCTTTGGAAGCTTAGTAAAGGGGCACCATTCAAAGCACCATTTTCTATTAAGCTAACCACTCTTGAGTCTGGCAAGACTTTTGTGGCCCATAATGTGATCCCTCTAGATTGGGAGCCTGGTCAGACATATTCATCAGTTGGGAATTTTTAA 822 0.4161 MAPILGHALSHIVLILIIGFLVIPSSCFNPKKLVNVTSYSSSHSDWSSSVATWYGDANGDGSEAGACGYGNAVGEPPFFSMISAGSPLIYNLGKGCGSCYEVKCTENSACPGNPVSVVITDECAECGSDAQYHFDLSGTAFSSMAISGRNEELRYAGKLAIQHRRVACNYPDMSVAFHVDDGSNQEYFAILIEYVNGDGDLNKVELMEGIESASWNTMKQSWGALWKLSKGAPFKAPFSIKLTTLESGKTFVAHNVIPLDWEPGQTYSSVGNF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00947 273 Pfam Expansin C-terminal domain 175 258 IPR007117 -
Trre6g00947 273 PANTHER EXPANSIN-B3 22 270 - -
Trre6g00947 273 Pfam Lytic transglycolase 83 148 IPR009009 -
Trre6g00947 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 173 IPR007112 -
Trre6g00947 273 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576|GO:0019953
Trre6g00947 273 PRINTS Major pollen allergen Lol pI signature 224 241 IPR005795 GO:0005576|GO:0019953
Trre6g00947 273 PRINTS Major pollen allergen Lol pI signature 104 114 IPR005795 GO:0005576|GO:0019953
Trre6g00947 273 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Trre6g00947 273 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Trre6g00947 273 PRINTS Major pollen allergen Lol pI signature 84 95 IPR005795 GO:0005576|GO:0019953
Trre6g00947 273 Gene3D - 30 168 IPR036908 -
Trre6g00947 273 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Trre6g00947 273 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Trre6g00947 273 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Trre6g00947 273 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Trre6g00947 273 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Trre6g00947 273 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Trre6g00947 273 SUPERFAMILY Barwin-like endoglucanases 34 171 IPR036908 -
Trre6g00947 273 CDD DPBB_EXPB_N 50 168 - -
Trre6g00947 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 269 IPR007117 -
Trre6g00947 273 Gene3D - 169 270 IPR036749 -
Trre6g00947 273 SUPERFAMILY PHL pollen allergen 174 269 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00947 Trre-Chr6 7291973 7294283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00947 27 273 Expansin Gene Family AT1G65680 55.061 5.28e-102 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00947 - - gmx:548090 409.453