Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00946 ATGGCTCCTATACTTGGACATGCATTCTCTCATATAATTGGTCATCTTCGGTGGCCACTTGGTATGGAGATGCCAACGGTGATGGAAGTGAAAGGTGGTGCTTGTGAATATGGAAATGCAGTTGGGGAACCTCCATTCTCCTCAATGATATCAGCTGGAAGTCCTCTCATCTATAACTCAGGCAAAGGCTGTGGTTCATGTTATGAGGTGAAGTGCACTGAAAATTCTGCATGCTTAGGCAATCCTGTGAGTGTGGTTATCACTGATGAGTGTGCTGAATGTGGCTCAGATGCTCAATATCATTTTGATTTGAGTGGCAGTGCTTTTAGTTCCATGGCAATTTCAGGTAGAAATGAAGAGCTACGCTATGCTGGGAAACTGGGCATTCAACATAGAAGGTGGGATCTAAAGCTAACTTTTTAA 423 0.435 MAPILGHAFSHIIGHLRWPLGMEMPTVMEVKGGACEYGNAVGEPPFSSMISAGSPLIYNSGKGCGSCYEVKCTENSACLGNPVSVVITDECAECGSDAQYHFDLSGSAFSSMAISGRNEELRYAGKLGIQHRRWDLKLTF 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00946 140 Pfam Lytic transglycolase 51 116 IPR009009 -
Trre6g00946 140 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 32 133 IPR007112 -
Trre6g00946 140 PRINTS Expansin/Lol pI family signature 31 49 IPR007118 GO:0005576
Trre6g00946 140 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Trre6g00946 140 PRINTS Major pollen allergen Lol pI signature 113 128 IPR005795 GO:0005576|GO:0019953
Trre6g00946 140 PRINTS Major pollen allergen Lol pI signature 72 82 IPR005795 GO:0005576|GO:0019953
Trre6g00946 140 PRINTS Major pollen allergen Lol pI signature 52 63 IPR005795 GO:0005576|GO:0019953
Trre6g00946 140 SMART dpbb_1 50 131 IPR007112 -
Trre6g00946 140 PANTHER EXPANSIN-B3 29 134 - -
Trre6g00946 140 SUPERFAMILY Barwin-like endoglucanases 29 135 IPR036908 -
Trre6g00946 140 Gene3D - 20 135 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00946 Trre-Chr6 7287463 7290531 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00946 25 133 Expansin Gene Family AT1G65680 58.716 9.58e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00946 - - gmx:100805408 185.267