Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00944 ATGGCTCCTATACTTGGACATGCATTATCTCATATAGTACTCATCCTTATTATTGGTTTCCTAGTGATCCCTTCTTCTTGTTTTAATCCCAAGAAGTTAGTTAATGTAACTTCATACTCCTCATCTCATTCAGATTGGTCATCTTCAGTGGCCACTTGGTATGGAGATGCCAACGGTGATGGAAGTGAAGCTGGTGCTTGTGGATATGGAAATGCAGTTGGGGAACCTCCATTCTTTTCAATGATATCGGCCGGAAGTCCTCTTATCTATAACTTGGGGAAAGGTTGTGGTTCTTGTTATGAGGTGAAGTGCACTAAAAATTCTGCATGCTCAGGCAATCCTGTGAGTGTGGTTATCACTGATGAGTGTGCTGAATGTGGCTCAGATGCTCAATATCATTTTGATTTGAGTGGCAGTGCTTTTAGTTCCATGGCAATTTCAGGTAGAAATGAAGAGCTACGCTATGCTGGGAAACTGGGCATTCAACATAGAAGATCCGCCCCTGGCAACTACCCTGATATGTCAGTAGCTTTCCATGTGGACGATGGATCCAACCAAGAATATTTTGCTATCTTAATTGAATATGTGAATGGGGATGGTGATCTTAACAAAGTTGAACTCATGGAAGGAATTGACTCAGCCTCTTGGGATACCATGAAACAATCATGGGGTGCTCTTTGGAAGATTAGTAAATAG 696 0.4181 MAPILGHALSHIVLILIIGFLVIPSSCFNPKKLVNVTSYSSSHSDWSSSVATWYGDANGDGSEAGACGYGNAVGEPPFFSMISAGSPLIYNLGKGCGSCYEVKCTKNSACSGNPVSVVITDECAECGSDAQYHFDLSGSAFSSMAISGRNEELRYAGKLGIQHRRSAPGNYPDMSVAFHVDDGSNQEYFAILIEYVNGDGDLNKVELMEGIDSASWDTMKQSWGALWKISK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00944 231 PANTHER EXPANSIN-B3 22 229 - -
Trre6g00944 231 PRINTS Major pollen allergen Lol pI signature 225 231 IPR005795 GO:0005576|GO:0019953
Trre6g00944 231 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576|GO:0019953
Trre6g00944 231 PRINTS Major pollen allergen Lol pI signature 104 114 IPR005795 GO:0005576|GO:0019953
Trre6g00944 231 PRINTS Major pollen allergen Lol pI signature 194 209 IPR005795 GO:0005576|GO:0019953
Trre6g00944 231 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576|GO:0019953
Trre6g00944 231 PRINTS Major pollen allergen Lol pI signature 84 95 IPR005795 GO:0005576|GO:0019953
Trre6g00944 231 Pfam Expansin C-terminal domain 176 230 IPR007117 -
Trre6g00944 231 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 165 IPR007112 -
Trre6g00944 231 CDD DPBB_EXPB_N 50 165 - -
Trre6g00944 231 Gene3D - 30 167 IPR036908 -
Trre6g00944 231 Gene3D - 169 231 IPR036749 -
Trre6g00944 231 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Trre6g00944 231 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Trre6g00944 231 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Trre6g00944 231 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Trre6g00944 231 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 231 IPR007117 -
Trre6g00944 231 SUPERFAMILY PHL pollen allergen 175 230 IPR036749 -
Trre6g00944 231 Pfam Lytic transglycolase 83 148 IPR009009 -
Trre6g00944 231 SUPERFAMILY Barwin-like endoglucanases 34 165 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00944 Trre-Chr6 7254281 7257618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00944 27 229 Expansin Gene Family AT1G65680 54.187 2.30e-78 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00944 - - gmx:548090 340.502