Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00929 ATGGCTTCTATTGCCACTTTCTTTAACAAGTTTTGCTATCTTTTCATCCTCATTGTTCATCTTGGTTGCTTCATGTTCACAACCTCCACTGTCGCCGCCACCGGGAAAAAAGATAACCGCCATTTATTATCATCAAAGAAACGAAAAATCTCACCTTTATCTCAACCATCTTCACCTTCACACCCTAAATTCAAAACCCACAAAGCCATTTCTTCTTCTTGGCATTTCATCAAACACCTTTTCTCCACTAATTCCTGCAAAACCGCCACCGCTACCACCACCACTCAGTCATCACCTCAATCCACCTCCACCATCACTTCAACCACCCCCAAATCCTCTCAACAATCTCTCATCTCATTGGTTCAACCCGACCCGAATTTTTCTGATGCACCACGCAAGAGACAACCCGAATCAGATATCTCCGCCGATAACAACCTCTTCTTTCCCCTCCGCAACGACATCTTCCCATGCACCGCATGCGGCGAGATTTTCCAAAAACCAAATCTCCTCGAAAATCACCAATCCACAAACCACGCCGTAGCGGAACTCCTCGGATCCGACCCGGGTCACAACATAGTCCAAATCATATTCAAATCGGGTTGGCCCGAAACAAACTTCCCAAATATCCACCGAATCCTAAAGATCCACAACAGCCAGAAAATCCTCTCAAAATTCGAAGAATATCGCGAAACCGTGAAATCAAAGGCGGCCCGTAACACGCGCCGCCGCGACGAACGCTGCATCGCCGACGGAAACGAACTCATGCGTTTTCACTGCTCAACGTTTCTATGCGAATTGGGACATAACGGGAATTCTTCAATTTGTTCTCAACAATTTTGTAATATTTGCGGAATTATTAAATCAGGTTTTTCACCAAAATTAGATGGAATTTCCACGCTGTCAACTAGCTGGAGGGCAAATTCGTCAATTCCAGATGACATGGAACGTGAATTTTCGTTCATGAATGTGAAACGGGCCATGCTTGTTTGTCGGGTTATTGCAGGTCGGGTCGGATCTGAATTGGATGATGAGTTGGATAAAACTGATGGGGGTTTTGATTCTGTGATGGCGCGTGCAGAGAGTGGTGTGTACACCCGACTTGATGATGAGGAGTTGGTTGTTTTTAATCCAAGGGCTGTGCTTCCTTGTTTTGTTATTGTGTATAGTGTGTGA 1173 0.4518 MASIATFFNKFCYLFILIVHLGCFMFTTSTVAATGKKDNRHLLSSKKRKISPLSQPSSPSHPKFKTHKAISSSWHFIKHLFSTNSCKTATATTTTQSSPQSTSTITSTTPKSSQQSLISLVQPDPNFSDAPRKRQPESDISADNNLFFPLRNDIFPCTACGEIFQKPNLLENHQSTNHAVAELLGSDPGHNIVQIIFKSGWPETNFPNIHRILKIHNSQKILSKFEEYRETVKSKAARNTRRRDERCIADGNELMRFHCSTFLCELGHNGNSSICSQQFCNICGIIKSGFSPKLDGISTLSTSWRANSSIPDDMEREFSFMNVKRAMLVCRVIAGRVGSELDDELDKTDGGFDSVMARAESGVYTRLDDEELVVFNPRAVLPCFVIVYSV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00929 390 MobiDBLite consensus disorder prediction 42 65 - -
Trre6g00929 390 MobiDBLite consensus disorder prediction 91 123 - -
Trre6g00929 390 ProSitePatterns Zinc finger C2H2 type domain signature. 157 178 IPR013087 -
Trre6g00929 390 MobiDBLite consensus disorder prediction 48 65 - -
Trre6g00929 390 SUPERFAMILY ADP-ribosylation 182 389 - -
Trre6g00929 390 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 73 388 - -
Trre6g00929 390 Gene3D - 180 389 - -
Trre6g00929 390 MobiDBLite consensus disorder prediction 91 140 - -
Trre6g00929 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 179 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00929 Trre-Chr6 7142673 7143845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00929 74 390 C2H2 Transcription Factor Family AT2G29660 54.217 3.12e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g00929 None None None