Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00928 ATGAAGCTCTCACTCTTTGGATTTGGAAAAAAAGATTCGTCAAAACAACTTCCCTCCCATACTCAAGAAGCAAACAAAACATGCGGAATATGTTTTGATCTGAAAACAGATTCTGAAATATTCAAAATAAGGTCCAAGGTCTTCAAAAGAAGAAAATGCAAGCACATCTTTTGCATTGACTGCATACGAAAGTATGTAGCAGTTCAAATAAATGATAATGCTTATAAGGTGATGTGTCCAAGTCCAAGTTGTTGTGTGAAATTTAAGCTAAAACGTTTGAAACACATTTTACCTAAAGAACTTGTTGCTAGATGGAAGTATTTAATTTCTGAGTTTTCTGTTCCCTCCAAGCCAAAGACTTACTGCCCTTTTCAGAATTGTTCTGTTTTGTTGGGGGAAGGTAATGACCTGAAAGGAGAACTTGTCAACCAGTCTAAGTGTCCTTCGTGTCACAGAGACTTTTGTGCACAGTGCAAAGTTCCATGGCATGCAGGAATGAGTTGTCAGAAATTCCAACAATTGAAAAAGAATGACAAAAATGATTTGGATAACAAATTTATGGAGTTGGCCAAAAAAAAACAGTGGCAAAGATGTCCAAATTGCTCCATGTATGTCAAGAGAAGTGAGGGATGCAGTTTCATGAAATGCAGATGTGGATGCAAATTCTGCTACAAATGTGTGAAGAAGCGATCATTTCAATTTGAACATAAATGCAATAGTAGTTAG 726 0.3636 MKLSLFGFGKKDSSKQLPSHTQEANKTCGICFDLKTDSEIFKIRSKVFKRRKCKHIFCIDCIRKYVAVQINDNAYKVMCPSPSCCVKFKLKRLKHILPKELVARWKYLISEFSVPSKPKTYCPFQNCSVLLGEGNDLKGELVNQSKCPSCHRDFCAQCKVPWHAGMSCQKFQQLKKNDKNDLDNKFMELAKKKQWQRCPNCSMYVKRSEGCSFMKCRCGCKFCYKCVKKRSFQFEHKCNSS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00928 241 SUPERFAMILY RING/U-box 119 173 - -
Trre6g00928 241 CDD Rcat_RBR_unk 194 226 - -
Trre6g00928 241 MobiDBLite consensus disorder prediction 1 20 - -
Trre6g00928 241 ProSiteProfiles Zinc finger RING-type profile. 28 80 IPR001841 -
Trre6g00928 241 SUPERFAMILY RING/U-box 185 230 - -
Trre6g00928 241 SUPERFAMILY RING/U-box 25 115 - -
Trre6g00928 241 CDD BRcat_RBR_unk 116 171 - -
Trre6g00928 241 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 227 IPR031127 GO:0004842|GO:0016567
Trre6g00928 241 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Trre6g00928 241 Gene3D - 165 240 - -
Trre6g00928 241 ProSiteProfiles TRIAD supradomain profile. 24 241 IPR044066 -
Trre6g00928 241 SMART ibrneu5 103 168 IPR002867 GO:0008270
Trre6g00928 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 118 IPR013083 -
Trre6g00928 241 Pfam Zinc finger, C3HC4 type (RING finger) 28 80 IPR018957 GO:0046872
Trre6g00928 241 Pfam IBR domain, a half RING-finger domain 114 168 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00928 Trre-Chr6 7139655 7140490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00928 26 226 C3H Transcription Factor Family AT2G19610 25.000 6.13e-17 77.4