Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00922 ATGAAAGAAGCACGTGTAGGTGGTGGTGATCATATAAAGATCACTAACCACTCTTCAATTGGTCCTCATTTGACTGCAATTGATAGATTCTTATGGAGTCAACAAAACCATATCCCTCAAAAGAAATTTCAACAAAGTGTTGATGATCAAAATATGTGTAGCTTTGATTGTTCTAATGCTTCAACTTATAGTTTTATGTGGCCTAATAATAACATGATCATGAATCAAGAAGCTAGCTTTGTTGATCATCTTTTGGCAAATGAAGAGGTGATGAATTGGACACACCAAATTCCTTCATTGTGTGTGGAAAAAGAAGATGTGGTCAATGGTTTAGGGTTTAAGGGTGCAAAAGTGGTTGGAAGAAAACCTAAGAAAGTGCCTTCTTTTTCTTTGATCAAAGGACAATGGACTGAAGAAGAAGACAGGAAATTGGTGAAATTGGTGAAGCAACATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAGTTGGAAGGAAGAGCTGGAAAGCAGTGTCGAGAGAGATGGCATAATCATCTAAGGCCAGATATTAAAAAAGATAGTTGGAGTGAAGAAGAAGAAAGGATACTAGTAGAAAGCCATGGCACGATTGGAAACCGTTGGGCTGAGATAGCGAAGAAAATTCCCGGAAGAACCGAGAATGCAATCAAGAATCATTGGAATGCAACAAAAAGGAGACAAAATTCAAAGAGAAAGAACAAAAGGCCTCAAACCACAAATGGTAAACCACAATCTTCTATTCTCCAAGACTATATCAAAACTTTGACTCAAAAACCGTCTGCCACTACTACTACTACTACCACTACTACTGCTGCAGTGTCTAGTGCCACGTCAGCAATCTCGGAGGACCCTTCAAACCAATCCCACCTTATTTTTTCCAACTTTTCTCATGAAAATTCATCATCACCACTTATAGCTGAATCTTATGATGATGATGAACTTCTCTTCATGCAACAACTTTTCAAGGTGAATAATAATGCTGAGCCAGTTAACCCCTACTCCAAGAAACACTCTTCAAACTCTTATTCATTGGATTATTCTTCTCAAACTAATAACAATAATCAGATTCTCTCTGATGTTAATGATCGTGGTTTTGTTCATTCCAATTCCAATTACCCTATGATGAATTACCTTAATTCTGATCACTACTTTTCACCAATCATGAATGGAATTCATCACAACCAGAGTAATGTGGAGTTGCAACTTGGGAATATGAATTATTCAGATGGAAAGAGAGAGATGGATTTGTTGGAGTTGGTTTCTTCTGCTCAGTTTTTTTAA 1299 0.3718 MKEARVGGGDHIKITNHSSIGPHLTAIDRFLWSQQNHIPQKKFQQSVDDQNMCSFDCSNASTYSFMWPNNNMIMNQEASFVDHLLANEEVMNWTHQIPSLCVEKEDVVNGLGFKGAKVVGRKPKKVPSFSLIKGQWTEEEDRKLVKLVKQHGVRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVESHGTIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSKRKNKRPQTTNGKPQSSILQDYIKTLTQKPSATTTTTTTTTAAVSSATSAISEDPSNQSHLIFSNFSHENSSSPLIAESYDDDELLFMQQLFKVNNNAEPVNPYSKKHSSNSYSLDYSSQTNNNNQILSDVNDRGFVHSNSNYPMMNYLNSDHYFSPIMNGIHHNQSNVELQLGNMNYSDGKREMDLLELVSSAQFF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00922 432 MobiDBLite consensus disorder prediction 216 253 - -
Trre6g00922 432 Gene3D - 187 256 - -
Trre6g00922 432 Pfam Myb-like DNA-binding domain 136 193 - -
Trre6g00922 432 ProSiteProfiles Myb-like domain profile. 180 230 IPR001005 -
Trre6g00922 432 CDD SANT 187 230 IPR001005 -
Trre6g00922 432 MobiDBLite consensus disorder prediction 229 243 - -
Trre6g00922 432 MobiDBLite consensus disorder prediction 333 362 - -
Trre6g00922 432 SMART sant 184 232 IPR001005 -
Trre6g00922 432 SMART sant 132 181 IPR001005 -
Trre6g00922 432 PANTHER MYB PROTEIN-RELATED 120 251 - -
Trre6g00922 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 183 IPR017930 -
Trre6g00922 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 234 IPR017930 -
Trre6g00922 432 SUPERFAMILY Homeodomain-like 130 226 IPR009057 -
Trre6g00922 432 CDD SANT 136 179 IPR001005 -
Trre6g00922 432 ProSiteProfiles Myb-like domain profile. 133 179 IPR001005 -
Trre6g00922 432 Gene3D - 132 184 - -
Trre6g00922 432 FunFam Transcriptional activator Myb isoform A 132 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00922 Trre-Chr6 7110095 7113138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00922 21 429 MYB Transcription Factor Family AT5G11050 39.140 4.74e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g00922 Myb_DNA-bind_6 5.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00922 K09422 - gmx:100786295 379.793