Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00911 ATGGGAAAAAGTTTGTTTCAAGAATCTCTTAAAGCTCTAGAAGCTGATATTCAGTATGCTAATACACTGGCATTAAGCCATCCAAGGGACAAAGAAGGGGGATGCTTTCAGATGAGGCTATCATACAGTCCAGTTGCTCCAATTTTTCTCTCACTTGTACAATGGACAGATTACCGCCTTGCCGGTGCTCTCGGTTTGCTCAGAATTTTAGTTTATGGGACATATGGAAATGGGAAGACTACTATTTCAATATATGAAAGGAAAGCAAGCATAAGACAATTTTACTCGGTTATATTTCCTGCTCTATTGCAACTTCAAATGGGCATCACAGATTTGGATGAAAGGAAACAGAAAGAAGAATATGCTATTAGATACCAAAAGAAGACTGATTTCAAAGATAGAAAAGAAACTGAAATTGACATTGAAAGAGAACGGGAATGTGGAGTTTGTTTGGAGGTGAAAACAAAAGTTGTTCTGCCTAATTGTTGCCACCAAATGTGTATCAACTGTTACAAAGACTGGTGTCTTAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCTTGAAGAGAGTAAACTCTGGGGACCTTTGGATTTACACAGACACAAGTGATATTGTTGATGTTGGAACAATTTTCAAAGAGAATTGTAAGATTCTGTTTCTTTACATAGAAAAATTGCCTCTTATTATTCCAGACCCAAGACATGTGTCCTATGATCCATTTTTTAGATAA 732 0.3757 MGKSLFQESLKALEADIQYANTLALSHPRDKEGGCFQMRLSYSPVAPIFLSLVQWTDYRLAGALGLLRILVYGTYGNGKTTISIYERKASIRQFYSVIFPALLQLQMGITDLDERKQKEEYAIRYQKKTDFKDRKETEIDIERERECGVCLEVKTKVVLPNCCHQMCINCYKDWCLRSQSCPFCRDSLKRVNSGDLWIYTDTSDIVDVGTIFKENCKILFLYIEKLPLIIPDPRHVSYDPFFR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00911 243 FunFam RING/U-box superfamily protein 125 194 - -
Trre6g00911 243 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Trre6g00911 243 SUPERFAMILY RING/U-box 134 190 - -
Trre6g00911 243 PANTHER RING FINGER PROTEIN 41, 151 4 235 - -
Trre6g00911 243 Pfam Zinc finger, C3HC4 type (RING finger) 144 190 - -
Trre6g00911 243 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Trre6g00911 243 SMART ring_2 147 184 IPR001841 -
Trre6g00911 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 194 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00911 Trre-Chr6 6997275 6999930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00911 119 188 C3H Transcription Factor Family AT1G04360 35.065 6.24e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00911 - - gmx:100808567 424.476