Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00904 ATGACTTTCCTGTTGGATGATATTTGGTCTTGCATTGTTGTGCTAGTGCTATTTTGGCTCATTGGTGGCGTCCACGGATCTGCTAATTTACAATTGGGACCTTACTCCTCACATTTGATAGAAATCAACTCAGTGTTAGTACAATCTATTAAGGTGGAACAAAATAATAAGCCAAAACCTGGCCTAATGCTTTATGGATTTGATCATCCTCCTCCATTAGATATCAAAATAAATTGGACTGAAATATATGATGAATCTATACCAGCAAAGTCTCAAAAGGAATGGATATTCTACTTGAATAAAGATTCTCAATTAGATATTTTTTACAATGTCAAGTCCTTAGGAGCACCCTTATTCCTTGTAATTTCTAATGGTAGAGAAAGCTTAATTGAGTGGAAAAAGGATCCATCATTCCCTAATGCAACATTATTGTACTGGAATAATATCAATGGAAGCGATAGTATTACACAGAAAATATCACATTCATCAACTTATTATGTGGCTATTGGAAATATGAATCCTCAAAATGTAAAGGTACAATTGAACTTCATTGTAAATGCACTTCTTTACAATACATCTGGCTCTTATCATAGATGTTCTTTGGATAATGGTCTATGTACATTAAACCCAGCCCTTTCAGCAAACATTGCACTATTAACTACTCCAGGTCCTAGAAAGGGTGTTTCTAATAATCATGAATGGTTTGATGTAAATGTGTCTTATGAACCAAGATGGATCATATATTTTGCAGGATCAGGTGTAGTGATTGTGCAAATCTTGTTTGCCTTGAAATTCTACAAAATGTTGCATACAAACAATGAAGAAAATACAGGATTCCAACAAGTGGAAGTGATTTCAGAACGAACTCCATTAATATCTAGGAAAGACAGTGATCTTTCAAGTTGGAGTTCAGCTTATGATTCTTTCTCTAGTGAAAATTCTGATGAAGGAAAATCAATGATTGAAGGGGAAACCAGTAATCTTCAATGCTTGTGTGTTATCTGCTTTGATGTCACAAGAGATTGTATTTTTCTCCCATGTGGCCATTTTGCAACATGTTTTGCGTGTGGAAAAAGAGTTGCCGAAGACACTTGCACTTGCCCCATTTGCAGAAGGAAATTGAAGAAACTAAGAAGAATTTATGTTGTGTAA 1152 0.349 MTFLLDDIWSCIVVLVLFWLIGGVHGSANLQLGPYSSHLIEINSVLVQSIKVEQNNKPKPGLMLYGFDHPPPLDIKINWTEIYDESIPAKSQKEWIFYLNKDSQLDIFYNVKSLGAPLFLVISNGRESLIEWKKDPSFPNATLLYWNNINGSDSITQKISHSSTYYVAIGNMNPQNVKVQLNFIVNALLYNTSGSYHRCSLDNGLCTLNPALSANIALLTTPGPRKGVSNNHEWFDVNVSYEPRWIIYFAGSGVVIVQILFALKFYKMLHTNNEENTGFQQVEVISERTPLISRKDSDLSSWSSAYDSFSSENSDEGKSMIEGETSNLQCLCVICFDVTRDCIFLPCGHFATCFACGKRVAEDTCTCPICRRKLKKLRRIYVV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00904 383 ProSiteProfiles Zinc finger RING-type profile. 332 371 IPR001841 -
Trre6g00904 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 383 IPR013083 -
Trre6g00904 383 SMART ring_2 332 370 IPR001841 -
Trre6g00904 383 SUPERFAMILY RING/U-box 331 377 - -
Trre6g00904 383 Pfam Zinc finger, C3HC4 type (RING finger) 330 376 - -
Trre6g00904 383 PANTHER OS05G0521000 PROTEIN 4 381 - -
Trre6g00904 383 Pfam Domain of unknown function (DUF4793) 155 261 IPR032010 -
Trre6g00904 383 Pfam Domain of unknown function (DUF4792) 61 129 IPR032008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00904 Trre-Chr6 6936954 6940825 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00904 332 380 C3H Transcription Factor Family AT3G06140 38.776 1.82e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00904 - - mtr:25490879 619.387