Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00903 ATGCCTTATAGGATCAACATTTCTATCACAGAGCCATTTATGACTTTCCTGTTGGATGATATTTGGTCTTGCATTGTTGTGCTAGTGCTATTTTGGCTCATTGGTGGCGTCCACGGATCTGCTAATTTACAATTGGGACCTTACTCCTCACATTTGATAGAAATCAACTCAGTGTTAGTACAATCTATTAAGGTGGAACAAAATAATAAGCCAAAACCTGGCCTAATGCTTTATGGATTTGATCATCCTCCTCCATTAGATATCAAAATAAATTGGACTGAAATATATGATGAATCTATACCAGCAAAGTCTCAAAAGGAATGGATATTCTACTTGAATAAAGATTCTCAATTAGATATTTTTTACAATGTCAAGTCCTTAGGAGCACCCTTATTCCTTGTAATTTCTAATGGTAGAGAAAGCTTAATTGAGTGGAAAAAGGATCCATCATTCCCTAATGCAACATTATTGTACTGGAATAATATCAATGGAAGCGATAGTATTACACAGAAAATATCACATTCATCAACTTATTATGTGGCTATTGGAAATATGAATCCTCAAAATGTAAAGGTACAATTGAACTTCATTGTAAATGCACTTCTTTACAATACATCTGGCTCTTATCATAGATGTTCTTTGGATAATGGTCTATGTACATTAAACCCAGCCCTTTCAGCAAACATTGCACTATTAACTACTCCAGGTCCTAGAAAGGGTGTTTCTAATAATCATGAATGGTTTGATGTAAATGTGTCTTATGAACCAAGATGGATCATATATTTTGCAGGATCAGGTGTAGTGATTGTGCAAATCTTGTTTGCCTTGAAATTCTACAAAATGTTGCATACAAACAATGAAGAAAATACAGGATTCCAACAAGTGGAAGTGATTTCAGAACGAACTCCATTAATATCTAGGAAAGACAGTGATCTTTCAAGTTGGAGTTCAGCTTATGATTCTTTCTCTAGTGAAAATTCTGATGAAGGAAAATCAATGATTGAAGGGGAAACCAGTAATCTTCAATGCTTGTGTGTTATCTGCTTTGATGTCACAAGAGATTGTATTTTTCTCCCATGTGGCCATTTTGCAACATGTTTTGCGTGTGGAAAAAGAGTTGCCGAAGACACTTGCACTTGCCCCATTTGCAGAAGGAAATTGAAGAAACTAAGAAGAATTTATGTTGTGTAA 1191 0.3493 MPYRINISITEPFMTFLLDDIWSCIVVLVLFWLIGGVHGSANLQLGPYSSHLIEINSVLVQSIKVEQNNKPKPGLMLYGFDHPPPLDIKINWTEIYDESIPAKSQKEWIFYLNKDSQLDIFYNVKSLGAPLFLVISNGRESLIEWKKDPSFPNATLLYWNNINGSDSITQKISHSSTYYVAIGNMNPQNVKVQLNFIVNALLYNTSGSYHRCSLDNGLCTLNPALSANIALLTTPGPRKGVSNNHEWFDVNVSYEPRWIIYFAGSGVVIVQILFALKFYKMLHTNNEENTGFQQVEVISERTPLISRKDSDLSSWSSAYDSFSSENSDEGKSMIEGETSNLQCLCVICFDVTRDCIFLPCGHFATCFACGKRVAEDTCTCPICRRKLKKLRRIYVV 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00903 396 Pfam Zinc finger, C3HC4 type (RING finger) 343 389 - -
Trre6g00903 396 SMART ring_2 345 383 IPR001841 -
Trre6g00903 396 SUPERFAMILY RING/U-box 344 390 - -
Trre6g00903 396 ProSiteProfiles Zinc finger RING-type profile. 345 384 IPR001841 -
Trre6g00903 396 PANTHER OS05G0521000 PROTEIN 11 394 - -
Trre6g00903 396 Pfam Domain of unknown function (DUF4792) 74 142 IPR032008 -
Trre6g00903 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 396 IPR013083 -
Trre6g00903 396 Pfam Domain of unknown function (DUF4793) 168 274 IPR032010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00903 Trre-Chr6 6936954 6940864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00903 345 393 C3H Transcription Factor Family AT3G06140 38.776 1.89e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00903 - - mtr:25490879 638.647