Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00900 ATGAAACCAACAATAACTCTCATTTTCATCTTCACCGTCATTTTCACCATAACAACCGTAAACAGCCTCGGCATCGCCTCCACAACCGCCATAGCCTACAACACCTCCACCATCTGCGGCATAGTCGCCGGTAAGCCCTACCAATACATCCAATGCTACCAAAACAAAAAACTCATTCCACTAATCCTTCCCAACGTTTCCTTTCAGTCCATTTCTGGTGGCCGCAGTTTCTTCTGCGGCCTTCGTTCTAATGGACTGAGTTTCTACTGTTGGGATACAAGGACACCAAAGTATTTTCTCAAACCAAGAAGATTGTATCACAGTGAAAATGTTCAGTTGAGTGATGTAGCTGTTGGTGATGATCAAGTTTGTGCTAGAGAGTTGCATTCTGGTGTTGTAAGGTGTTGGAGAGGCTATGGTGGAAATAATGGAGTTGAGTTTCCTTCTCCTGATGAAAGTTTTCGGTTTCGAACCGTTACTTGTGGTTATGGTTTTTGTTGTGGGATATTAAAGGTGAATAATAGAGTTTTTTGTTGGGGTGAAAATGGTGTTGAAAATTTGATTCAGAAACAGTTTGAGAATTTATCAATGTCAACATTGGTTTCTGGTGTGTCACATGTTTGTGGTTTGAATCTTAATGGTGTTTTAGTTTGTAAAGGGAAAAACAACAACAATGATTATTCTGGCAAGTTAAATGTTCCTTTGAATTCTGGTTCTGTTTTTTCAGGTCTTGCTTTAGGTGACAATTTCACTTGTGGTATAAGAATAAAAAATGGATTTGTTCAATGTTGGGGTGGTAATTTTGATACTGATAATGTTGTGAATGATCATGTGATGAAAGGTGTTTCTTTTGAGTCAATTGTTGCTGGTTTAGATTTTGTTTGTGGTTTGACAACTAAGAATTTGTCTCTAATTTGTTGGGGTAATCCTAATTGGTATTCTAAACCTCATTTGAAAAATGATGTTTATGTTCCATTAGGAATGATTCTTCCTGGTCCATGTGTTAAGGATGATTCTTGTAGCTTTTGTGGTATGTATCCAAATTCTGATTTTCTATGTCATGGATTTGGAAATATTTGTTATCAATGTCGACCCGAGCTTCCGTTTGCCGTGCAATTGCCACCACCAATATCATCATCACCTACTAAACAACCTTCTTTAGATAATGAAGAAAAAGGTTCAAGGGGTTGGAAACTTATGACATTTCTGATTATTGGATCAGTTGGTGCTTTTGCTGGTTTATGCACTATTCTTTATTTTGTTATGATTGGTGCTAGAAGATTGTTAAAGGCGAAACTCGATAATTCGGTTCATGCTAGTAGTGAATGTGAATCTGATGATGCTTATGTTGATATAGCTCCAATGCAAAATGTTGGTACTATTAATAATAATGGAACATCAACATTAAGATCTTTTTCTAGCAAAAGACATAGTTCAAGTAGATTAAGAAGTGGTTCATCTTCAAAGCAATTAGACAGAACTGAGAGTTTCTCATTTTGGGAATTAGTTACAGCTAGTGACAATTTCTCAATGGAAAACAAAATCGGTTCCGGTAGTTTCGGGTGTGTTTACAAAGGTAGACTAATCGACGGCCGTGAAGTTGCAATTAAACGAGGCGATACGGTTTCCGATTTCGGATTATCGTTGATCTGGCAAGAAACCGAACAAGAATTGATGTCGAATATAAAAGCGGTCGGAACGGTTGGTTATATAGATCCTGAGTACTATGTTTTGAATGTTTTAACAACAAAAAGTGATGTTTATGGTTTAGGTGTTGTGATGTTGGAACTTTTGACAGGTAAAAAAGCAGTGTTTAAGAATGAAGATGGATCAGGTCCTATTGGTGTGGTGGAATATACAGGAGGAAAGATAGGAACAGGTGAGGTGTGGAATTTGTTGGATCATAGAGTTGGAATACCAGAAGTGAATGAAGTTGAATCTATTGAGATTATGGCTTATACTGCTATGCATTGTGTTAATTTGGAGGGTAAAGACAGGCCTAATATGGTTGATATTGTTGCTAATTTGGAAAGGGCTTTGGCTTTTCTTGAGGGTAGTCCTGGTAGTTTTTCTATGTCTTCATTTTCTGCCAATCTTCCATGA 2103 0.3738 MKPTITLIFIFTVIFTITTVNSLGIASTTAIAYNTSTICGIVAGKPYQYIQCYQNKKLIPLILPNVSFQSISGGRSFFCGLRSNGLSFYCWDTRTPKYFLKPRRLYHSENVQLSDVAVGDDQVCARELHSGVVRCWRGYGGNNGVEFPSPDESFRFRTVTCGYGFCCGILKVNNRVFCWGENGVENLIQKQFENLSMSTLVSGVSHVCGLNLNGVLVCKGKNNNNDYSGKLNVPLNSGSVFSGLALGDNFTCGIRIKNGFVQCWGGNFDTDNVVNDHVMKGVSFESIVAGLDFVCGLTTKNLSLICWGNPNWYSKPHLKNDVYVPLGMILPGPCVKDDSCSFCGMYPNSDFLCHGFGNICYQCRPELPFAVQLPPPISSSPTKQPSLDNEEKGSRGWKLMTFLIIGSVGAFAGLCTILYFVMIGARRLLKAKLDNSVHASSECESDDAYVDIAPMQNVGTINNNGTSTLRSFSSKRHSSSRLRSGSSSKQLDRTESFSFWELVTASDNFSMENKIGSGSFGCVYKGRLIDGREVAIKRGDTVSDFGLSLIWQETEQELMSNIKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKKAVFKNEDGSGPIGVVEYTGGKIGTGEVWNLLDHRVGIPEVNEVESIEIMAYTAMHCVNLEGKDRPNMVDIVANLERALAFLEGSPGSFSMSSFSANLP 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00900 700 ProSiteProfiles Protein kinase domain profile. 509 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00900 700 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 542 686 IPR044815 GO:0004674
Trre6g00900 700 SUPERFAMILY Protein kinase-like (PK-like) 495 674 IPR011009 -
Trre6g00900 700 SMART serkin_6 509 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00900 700 Gene3D Transferase(Phosphotransferase) domain 1 541 693 - -
Trre6g00900 700 Pfam Protein kinase domain 542 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00900 700 SUPERFAMILY RCC1/BLIP-II 59 311 IPR009091 -
Trre6g00900 700 Gene3D - 53 323 IPR009091 -
Trre6g00900 700 Gene3D Transferase(Phosphotransferase) domain 1 471 540 - -
Trre6g00900 700 ProSitePatterns Protein kinases ATP-binding region signature. 515 537 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00900 Trre-Chr6 6913354 6915810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00900 542 691 Receptor kinase-like Gene Family AT3G55950 55.975 3.31e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trre6g00900 Pkinase 5.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00900 - - gmx:100776682 573.163