Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00899 ATGAAACCAACAATAACTCTCATTTTCATCTTCACCGTCATTTTCACCATAACAACCGTAAACAGCCTCGGCATCGCCTCCACAACCGCCATAGCCTACAACACCTCCACCATCTGCGGCATAGTCGCCGGTAAGCCCTACCAATACATCCAATGCTACCAAAACAAAAAACTCATTCCACTAATCCTTCCCAACGTTTCCTTTCAGTCCATTTCTGGTGGCCGCAGTTTCTTCTGCGGCCTTCGTTCTAATGGACTGAGTTTCTACTGTTGGGATACAAGGACACCAAAGTATTTTCTCAAACCAAGAAGATTGTATCACAGTGAAAATGTTCAGTTGAGTGATGTAGCTGTTGGTGATGATCAAGTTTGTGCTAGAGAGTTGCATTCTGGTGTTGTAAGGTGTTGGAGAGGCTATGGTGGAAATAATGGAGTTGAGTTTCCTTCTCCTGATGAAAGTTTTCGGTTTCGAACCGTTACTTGTGGTTATGGTTTTTGTTGTGGGATATTAAAGGTGAATAATAGAGTTTTTTGTTGGGGTGAAAATGGTGTTGAAAATTTGATTCAGAAACAGTTTGAGAATTTATCAATGTCAACATTGGTTTCTGGTGTGTCACATGTTTGTGGTTTGAATCTTAATGGTGTTTTAGTTTGTAAAGGGAAAAACAACAACAATGATTATTCTGGCAAGTTAAATGTTCCTTTGAATTCTGGTTCTGTTTTTTCAGGTCTTGCTTTAGGTGACAATTTCACTTGTGGTATAAGAATAAAAAATGGATTTGTTCAATGTTGGGGTGGTAATTTTGATACTGATAATGTTGTGAATGATCATGTGATGAAAGGTGTTTCTTTTGAGTCAATTGTTGCTGGTTTAGATTTTGTTTGTGGTTTGACAACTAAGAATTTGTCTCTAATTTGTTGGGGTAATCCTAATTGGTATTCTAAACCTCATTTGAAAAATGATGTTTATGTTCCATTAGGAATGATTCTTCCTGGTCCATGTGTTAAGGATGATTCTTGTAGCTTTTGTGGTATGTATCCAAATTCTGATTTTCTATGTCATGGATTTGGAAATATTTGTTATCAATGTCGACCCGAGCTTCCGTTTGCCGTGCAATTGCCACCACCAATATCATCATCACCTACTAAACAACCTTCTTTAGATAATGAAGAAAAAGGTTCAAGGGGTTGGAAACTTATGACATTTCTGATTATTGGATCAGTTGGTGCTTTTGCTGGTTTATGCACTATTCTTTATTTTGTTATGATTGGTGCTAGAAGATTGTTAAAGGCGAAACTCGATAATTCGGTTCATGCTAGTAGTGAATGTGAATCTGATGATGCTTATGTTGATATAGCTCCAATGCAAAATGTTGGTACTATTAATAATAATGGAACATCAACATTAAGATCTTTTTCTAGCAAAAGACATAGTTCAAGTAGATTAAGAAGTGGTTCATCTTCAAAGCAATTAGACAGAACTGAGAGTTTCTCATTTTGGGAATTAGTTACAGCTAGTGACAATTTCTCAATGGAAAACAAAATCGGTTCCGGTAGTTTCGGGTGTGTTTACAAAGGTAGACTAATCGACGGCCGTGAAGTTGCAATTAAACGAGGCGATACGTGCGCGAGGAAGAAGAAATTTCAAGAAAAAGAAACTGCTTTTGATTCTGAGTTAACTTTGTTGTCAAGACTTCATCATAAGCATTTGGTGAGACTAATTGGTTTCTGTGAAGAGAATGATGAGAGACTTTTGGTTTATGAGTATATGAGTAATGGATCATTACATGATCATTTGCATGATAAGAACAATGTTGAGAAAAATAGTAGTATTATGAATTCATGGAAAATGAGAATCAAAGTTGCATTAGATGCTGCAAGAGGGATTGAGTACATGCATAACTACGCGGTGCCGCCGATTATTCATAGAGATATTAAATCATCAAATATACTTATTGACTCAAATTGGAATGCTAGGGTTTCCGATTTCGGATTATCGTTGATCTGGCAAGAAACCGAACAAGAATTGATGTCGAATATAAAAGCGGTCGGAACGGTTGGTTATATAGATCCTGAGTACTATGTTTTGAATGTTTTAACAACAAAAAGTGATGTTTATGGTTTAGGTGTTGTGATGTTGGAACTTTTGACAGGTAAAAAAGCAGTGTTTAAGAATGAAGATGGATCAGGTCCTATTGGTGTGGTGGAATATACAGGAGGAAAGATAGGAACAGGTGAGGTGTGGAATTTGTTGGATCATAGAGTTGGAATACCAGAAGTGAATGAAGTTGAATCTATTGAGATTATGGCTTATACTGCTATGCATTGTGTTAATTTGGAGGGTAAAGACAGGCCTAATATGGTTGATATTGTTGCTAATTTGGAAAGGGCTTTGGCTTTTCTTGAGGGTAGTCCTGGTAGTTTTTCTATGTCTTCATTTTCTGCCAATCTTCCATGA 2457 0.3687 MKPTITLIFIFTVIFTITTVNSLGIASTTAIAYNTSTICGIVAGKPYQYIQCYQNKKLIPLILPNVSFQSISGGRSFFCGLRSNGLSFYCWDTRTPKYFLKPRRLYHSENVQLSDVAVGDDQVCARELHSGVVRCWRGYGGNNGVEFPSPDESFRFRTVTCGYGFCCGILKVNNRVFCWGENGVENLIQKQFENLSMSTLVSGVSHVCGLNLNGVLVCKGKNNNNDYSGKLNVPLNSGSVFSGLALGDNFTCGIRIKNGFVQCWGGNFDTDNVVNDHVMKGVSFESIVAGLDFVCGLTTKNLSLICWGNPNWYSKPHLKNDVYVPLGMILPGPCVKDDSCSFCGMYPNSDFLCHGFGNICYQCRPELPFAVQLPPPISSSPTKQPSLDNEEKGSRGWKLMTFLIIGSVGAFAGLCTILYFVMIGARRLLKAKLDNSVHASSECESDDAYVDIAPMQNVGTINNNGTSTLRSFSSKRHSSSRLRSGSSSKQLDRTESFSFWELVTASDNFSMENKIGSGSFGCVYKGRLIDGREVAIKRGDTCARKKKFQEKETAFDSELTLLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLHDHLHDKNNVEKNSSIMNSWKMRIKVALDAARGIEYMHNYAVPPIIHRDIKSSNILIDSNWNARVSDFGLSLIWQETEQELMSNIKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKKAVFKNEDGSGPIGVVEYTGGKIGTGEVWNLLDHRVGIPEVNEVESIEIMAYTAMHCVNLEGKDRPNMVDIVANLERALAFLEGSPGSFSMSSFSANLP 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00899 818 FunFam Somatic embryogenesis receptor kinase 1 481 589 - -
Trre6g00899 818 ProSiteProfiles Protein kinase domain profile. 509 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00899 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Trre6g00899 818 SUPERFAMILY Protein kinase-like (PK-like) 485 794 IPR011009 -
Trre6g00899 818 SMART serkin_6 509 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00899 818 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 194 804 IPR044815 GO:0004674
Trre6g00899 818 Gene3D Transferase(Phosphotransferase) domain 1 590 802 - -
Trre6g00899 818 Pfam Protein kinase domain 510 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00899 818 MobiDBLite consensus disorder prediction 461 487 - -
Trre6g00899 818 Gene3D - 54 323 IPR009091 -
Trre6g00899 818 CDD STKc_IRAK 515 796 - -
Trre6g00899 818 Gene3D Phosphorylase Kinase; domain 1 481 589 - -
Trre6g00899 818 ProSitePatterns Protein kinases ATP-binding region signature. 515 545 IPR017441 GO:0005524
Trre6g00899 818 SUPERFAMILY RCC1/BLIP-II 59 311 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00899 Trre-Chr6 6913354 6915810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00899 4 809 Receptor kinase-like Gene Family AT3G55950 49.819 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trre6g00899 Pkinase 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00899 - - gmx:100776682 1030.78