Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00897 ATGTGCAACGGTTCAAATAGAAAGCCTTCTCAAACTGGTTTGATTAGGGAAGATGAATATGGAAGAGAAGAAGAACTTCATCATAAGATTTCTCCATTGCTTGAGTTTTCAGCAAAAGATGATGTAATAGCTTTCAAAGATTCTGTTGAAAAAGACGGTTGTGATGTCGATGAGGTAGGGTTATGGTATGGAAGGAGGGTTGGCTCAAAGGAAATGAGTTATGAAGAAAGGACTCCTCTTATGATTGCTGCCTTATTTGGAAGCAAGGGTGTGTTGTCTTATATTCTCGAAACTGGTCGTGTTGATGTTAACCGAGCGTGTGGTTCGGATGGTGCTACTGCTCTTCATTGTGCTGTTTTTGGTTGTTCTGCTGCTTCTGCTGATGTTATCAAACTTTTGCTTGATGCATCTGCAGATGTTAATTCTGTTGATGCGAACGGTAACCGGTGTAGTGACTTGATTGTTTCGGTTTCTAATAGTATCTTCGGTTCAAGGAAGAGGATACTAGCCTTACTAGAAGGTGAAGATGGCGTTGATTATGACGCTGATGATTGCCTTAAGGTAGCAGGTTTCCAAATGGGGGAGCTGCAACAAGATTCAGGTTCACCTCGAATCGAGAAGAAAGATTATCCGGTTGATCCATCTCTACCAGACATAAATAATGCGGTATATAGTACAGATGAATTTAGGATGTTTACATTTAAAGTCAAGCCTTGTTCAAGAGCTTATTCTCATGATTGGACCCAGTGCCCCTTTGCTCATCCTGGGGAAAATGCAAGGCGACGTGATCCGAGGAAATATCATTACAGCTGTGTCCCTTGTCCCGAATTTCGGAAGGGATCATGCAGCAAAGGGGATGCTTGTGAATATGCACATGGAATTTTTGAGAGCTGGCTTCATCCTGCTCAATATAGAACGAGGCTTTGCAAAGATGAAACTGAATGCACAAGAAGGGTTTGTTTCTTTGCTCACAAACCCGAAGAGCTTCGTCCGGTGTACGCTTCTACTGGTTCTGCTTTGCCTTCACCTACTTCATATTCAACTTCACCTAGTGCTTCTTCAATGGATTCTTTCACACTGAACTCTCCATCTGCGGCGATGCCACCTCTGACTCCATCTGCAGTGTCTTCTCCTTCATGCGGAACCATGTGGCCGACTCAGTCTCATGTTGCAATCCCTACACTTCAGATGCCGAGAAGCAGAATGAATACTGCACATAATGCTAGAGATAATATTGAATTGCTCGAACTTGAAAACTGCCTTATGCGGAAGCTAATGATTGAAGGGATGACAGGTCTTTCATCCCCTTCAAATAGGTTTTCAGGAATGAATCTTACTAACCTTGAAGACATTTTCGGGTCGCCGAGACAATCTCCAACATCAATGCAGGTGCATGAGAATGTAAACCAGCAAATGTGGGGCTATCCTTCTGACATTACCAATTCAAATGTGATTGGATCACCACAATTCAGGGCTAATGCATCTATGAATGCAAGATGTGATGCCTTTTCAAAACGGAGCCATAGCTTTATTGAGCGCAGCAGCACGACGAGCTTTAATTCCGAGCTTCCTTCTACTACATCAATCACTGCGGCGCCTTCAAACTTCTCCGGATGGGGCTCTCCAGATGGAAAATTAGACTGGTCCATTCGTGGCGATGAACTCAACAAAATGAGAAAATCATATTCTTTCGGCTTTCGAAACACTAATAGCTTTTCAACAATGGATGCACCAAATGTTGATAATAATCCAGAAGTATTATCAAGTCAGGAAACATGGGTTAATTCACTGGTGAAGGATGATCCTCCAACATTGGAATCTGATCAATATTGTGTTGAAGTTGAAGATGATCAACAATGCCATAATCAAGACGCGGTTCTCTCTTTGCCGGAGCAATTGTACATGGACCATGAGCAGACAGTGATGTGA 1929 0.4272 MCNGSNRKPSQTGLIREDEYGREEELHHKISPLLEFSAKDDVIAFKDSVEKDGCDVDEVGLWYGRRVGSKEMSYEERTPLMIAALFGSKGVLSYILETGRVDVNRACGSDGATALHCAVFGCSAASADVIKLLLDASADVNSVDANGNRCSDLIVSVSNSIFGSRKRILALLEGEDGVDYDADDCLKVAGFQMGELQQDSGSPRIEKKDYPVDPSLPDINNAVYSTDEFRMFTFKVKPCSRAYSHDWTQCPFAHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFESWLHPAQYRTRLCKDETECTRRVCFFAHKPEELRPVYASTGSALPSPTSYSTSPSASSMDSFTLNSPSAAMPPLTPSAVSSPSCGTMWPTQSHVAIPTLQMPRSRMNTAHNARDNIELLELENCLMRKLMIEGMTGLSSPSNRFSGMNLTNLEDIFGSPRQSPTSMQVHENVNQQMWGYPSDITNSNVIGSPQFRANASMNARCDAFSKRSHSFIERSSTTSFNSELPSTTSITAAPSNFSGWGSPDGKLDWSIRGDELNKMRKSYSFGFRNTNSFSTMDAPNVDNNPEVLSSQETWVNSLVKDDPPTLESDQYCVEVEDDQQCHNQDAVLSLPEQLYMDHEQTVM 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00897 642 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872
Trre6g00897 642 PANTHER UNKEMPT FAMILY MEMBER 35 600 IPR045234 -
Trre6g00897 642 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Trre6g00897 642 SMART ANK_2a 110 142 IPR002110 GO:0005515
Trre6g00897 642 SMART ANK_2a 75 105 IPR002110 GO:0005515
Trre6g00897 642 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
Trre6g00897 642 Gene3D - 268 331 - -
Trre6g00897 642 FunFam Zinc finger CCCH domain-containing protein 66 226 294 - -
Trre6g00897 642 MobiDBLite consensus disorder prediction 337 373 - -
Trre6g00897 642 MobiDBLite consensus disorder prediction 334 373 - -
Trre6g00897 642 Pfam Ankyrin repeats (3 copies) 68 144 IPR002110 GO:0005515
Trre6g00897 642 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Trre6g00897 642 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Trre6g00897 642 Gene3D - 115 173 IPR036770 -
Trre6g00897 642 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Trre6g00897 642 Gene3D - 22 114 IPR036770 -
Trre6g00897 642 SUPERFAMILY Ankyrin repeat 28 156 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00897 Trre-Chr6 6888570 6890498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00897 25 565 C2H2 Transcription Factor Family AT5G12850 42.208 3.99e-138 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre6g00897 Ank_2 3.6e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00897 - - mtr:11423139 852.432