Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00888 ATGGAGGGTTTCGATAATTCAAGCTCTCTAAACCCTAAACCTGCTTCCTCGCAACAAAAGCTTCAAATCAGTGAAAGGGTTGAGGTGAGGAGTTTTGAGGAAGGTTTTCTGGGATCATGGCATCCAGGGACAGTTATTCATTCTGAGAAGCTGAGACGTTATGTTAGATATGAGAATATTTTGAATGATGATGGGTTGAATAATTTTGTGGAAGTAGTGACTGTTTCAAGTGTGTTGGATGGTAATTTCGGAACTCCGAGTAAACGTGGGGTGATTAGGCCACTGCCACCTTCGGTTGAGTTTGAGAAATGTGATGTTAAGTATGGTCTGTGTGTCGATGTAAATTATCAGGAAGCTTGGTGGGAAGGTGTTGTATATGATCACTGTGATGGAATGGAGGAGAGGAGTGTGTTTTTCCCTGACCTGGGTGATGAAATGAAGGTCGGAATTCATCAAATGCGGATTACCCAGGATTGGGATGAAGTTACGGAGAAGTGGGAGCAAAGAGGGAAATGGTTGTTTCTTGAATTGATTGAGGAGTGTGAGCAGGAATCATATGTTCCAGTTTCGGTAAAGCAAATTTGGTATGATGTGCGACAGAAAGAGGAATTTTCAGCAATTGAGGAATGGACTTTGAATGTCAAGAAGGATTTGTGGAGAGATATGATAGCGGAGGTAGTTGGTGACTACTTGGCTATTACATTAAGTGAAGTTTTCTCAGCCTTGAATCTTCCAGAGCTGAACTTAGTTGAACTAATATCTAATGTTGATTCAAACATGACTTTATCTGAAAAGGAAAATTTCGAGCAGAGAGAATCTGTTCTTCCTGTTGAAAAGGACTTACCTGTGTTTCAAAATGAAGTTTCCTGCAACTGTGCTGGTGAAGCGGTTTCGGTTGCTATTGGTTTTGAGAAAAATGAACACGGTTCGCCAACTTATTTAAACTCCAATAGGTGGGAACGCGTGATATTTTCTGAAACTGAATACTGTCCTGATGCTGTTAAGCAATATGCACTTGCTTCTAACGACAAAATGACTATGGCATCTTTGAAGGAAAAAGTATTGAAACATCTTGCATATCTTGGATGGGAAATTGACGTTGACCGCTGTAATAAACATTACAGGTACAAGCCACCCCCCGGAGACCATTGCATGAAGAAACTTTACTACTCACTTATTGAACTTTGTAAAGTTATGCAAATGGAATCGATGCATCCTACCAGTGACTGTCTTATTCCAGATGTGCCTCTTAATGCATTGGAAAATATTCAGAACCAAGATGCATCTCCTCTAGTTGCAGACGAACAAGCACCTCCTTCTGTTGCAGCGGCAGATGAGCAAGCTTATTGTCCTCAAGCCATTGTGGAATACCACAAACGTGCATTGGAGGCGAAATGGAAAGATAAAAGTGAAGTTAGATCAAAAGTAAAAAGACATCTGTTAGCAGAAGGATGGACTTTAATTGATCCACCTCCAAATAATCGAAGAAGAGGTGTTGTGTACATTTCTCCGCAAGAGCGGAGATTCCACTCACTGATCGCAGTATGTGAATTCTATGTTGAAGAAATTATTCCGAGATTGACTATTTCTGGCATGCAACCTTCAAATAGACCATCACATTTGCTTCCTCAGGAGCCTGAGTTACACACTATAGACACTGCTGCTGTGAATAAATCAAGTGCAAATCGAAAGCGAAAACACTTTAGGAATTCGGATGACAGCTTGGCGAAGTGCCAAAGCAATGAATCAACACTAAGGGTGCTGAGATCGAATAAAAGGGTGCGAGAGGCATCTTCCTCTTGTATGTCAAACCAGAAACCTCTAAATGTTCTGTCTTGGTTGATAGACAGCAACATGGTGTTACCAAGGTCTAAGGTTTACTATCGAGCAAAACGTGGACACCGTGTTTTGGCTGAGGGGAGAATAAGTCATGAAGGAATCAAGTGTATCTGTTGTTCGAGAATATACAGTCTCGTTTCCTTCGAATTTCATGCTACTGGCATTAATACCACCAGACCAAGTGCTAGTATCTTTCTTGACGATGGTAGATCGCTCTTATCTTGCCAGATGCAAATAATGCAAGATCACAAGTCAAAGGAGGCTATGATAAAACCACTCTGTGATTTGCGTCCGGGTGAAAACGACTACATTTGTTCCGTTTGCCACTATGGTGGCGAACTTCTTTTGTGCGACCAATGTCCGTCTTCATATCATAACACATGTCTTGGTCTGGAGAATGTTCCTGATGGTGAATGGTTTTGTCCATCATGTCTTTGCGGGGTTTGTGGACAAAGCAAATTCAACGTGGGTGGTGAGGATGGACATTTCCTTACATGCATGCAGTGTGAACATAAATATCACGTTGCATGCCTGAAAAGTAGAGATACAAGTAAATATGGAAGTTATGTGGAAAACCGGTTCTGCGGAAAAGACTGCGAAAAGCTATACACAGGCCTTCAAAGTCTGTTGGGAGAGCCATTCCCAGTGGGTTCGGACGGTCTAACATGGACACTGGTGAAGTGTGTAGACTCTGAGAGTTGTGATCTGGATAGTAGGCAAAGTGAATTATGGGCAGCATGGTACAGCAAACTTAATGTTGCTCTATCAGTGATGCATGAGTGTTTCGAGCCTCTTAAGGAATCCACATCTTGCAGAGATCTGGTGGATGATGTCATATTCAGCAGATGGTCCGAACTTAATCGAATGAATTTCCGGGGTTTCTATACTGTACTTCTGGAGAAAAATGAAGATCTGGTCAGTGTGGCAACTATTAGGGTCCTTGGAGATAAGGTAGCTGAAGTACCTCTTGTTGCTACCAGATTTCATTATCGTCGACATGGAATGTGTCGCATATTAATGGATGAACTGGAAAAGAAACTCACACAATTAGGAGTGGAGCGGCTCGTTTTGCCTGCTGTTCCCAGTGTGGCAGATACTTGGACAGGTTGTTTTGGCTTTTCTAAGATGACAACCTTGGAGCGATCAAAATTTCTGGATTATACTTTCTTGGATTTTCCCGGCACCATCATGTGCCAAAAGCTTTTGAAGATTCCATCTCCAGATTCAGTTTTGCCAAATGAGTTCCAACAAAAACACAATGCTATCTCCGGAAGCAGTAGTGGTGCTAATAAGTCTCCGGTATCTGAAGTTGACCAAGCAGGAGAGACAGGCAAAAAAGAAATGCAGGACCAACAAATGTTGGATACTTTTGAAGGCAATAATGATAATCTTGGCAGTGCTGTTATTGACTGTGTCGCCATGGGGGAGCAACCAAGTCCTGAGGATCAACATTGCCAGGATGGAACCTCCACTTCACAGGGCACTTTTGAAAAATTCAATGGCTTGTGCTACTCTAGAAGAAGGAAGGTGAAAGATCATTAG 3381 0.4209 MEGFDNSSSLNPKPASSQQKLQISERVEVRSFEEGFLGSWHPGTVIHSEKLRRYVRYENILNDDGLNNFVEVVTVSSVLDGNFGTPSKRGVIRPLPPSVEFEKCDVKYGLCVDVNYQEAWWEGVVYDHCDGMEERSVFFPDLGDEMKVGIHQMRITQDWDEVTEKWEQRGKWLFLELIEECEQESYVPVSVKQIWYDVRQKEEFSAIEEWTLNVKKDLWRDMIAEVVGDYLAITLSEVFSALNLPELNLVELISNVDSNMTLSEKENFEQRESVLPVEKDLPVFQNEVSCNCAGEAVSVAIGFEKNEHGSPTYLNSNRWERVIFSETEYCPDAVKQYALASNDKMTMASLKEKVLKHLAYLGWEIDVDRCNKHYRYKPPPGDHCMKKLYYSLIELCKVMQMESMHPTSDCLIPDVPLNALENIQNQDASPLVADEQAPPSVAAADEQAYCPQAIVEYHKRALEAKWKDKSEVRSKVKRHLLAEGWTLIDPPPNNRRRGVVYISPQERRFHSLIAVCEFYVEEIIPRLTISGMQPSNRPSHLLPQEPELHTIDTAAVNKSSANRKRKHFRNSDDSLAKCQSNESTLRVLRSNKRVREASSSCMSNQKPLNVLSWLIDSNMVLPRSKVYYRAKRGHRVLAEGRISHEGIKCICCSRIYSLVSFEFHATGINTTRPSASIFLDDGRSLLSCQMQIMQDHKSKEAMIKPLCDLRPGENDYICSVCHYGGELLLCDQCPSSYHNTCLGLENVPDGEWFCPSCLCGVCGQSKFNVGGEDGHFLTCMQCEHKYHVACLKSRDTSKYGSYVENRFCGKDCEKLYTGLQSLLGEPFPVGSDGLTWTLVKCVDSESCDLDSRQSELWAAWYSKLNVALSVMHECFEPLKESTSCRDLVDDVIFSRWSELNRMNFRGFYTVLLEKNEDLVSVATIRVLGDKVAEVPLVATRFHYRRHGMCRILMDELEKKLTQLGVERLVLPAVPSVADTWTGCFGFSKMTTLERSKFLDYTFLDFPGTIMCQKLLKIPSPDSVLPNEFQQKHNAISGSSSGANKSPVSEVDQAGETGKKEMQDQQMLDTFEGNNDNLGSAVIDCVAMGEQPSPEDQHCQDGTSTSQGTFEKFNGLCYSRRRKVKDH 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00888 1126 MobiDBLite consensus disorder prediction 1085 1110 - -
Trre6g00888 1126 Pfam Tify domain binding domain 640 691 IPR032308 -
Trre6g00888 1126 MobiDBLite consensus disorder prediction 1 22 - -
Trre6g00888 1126 CDD PHD2_CHD_II 718 757 - -
Trre6g00888 1126 CDD NAT_SF 910 970 - -
Trre6g00888 1126 MobiDBLite consensus disorder prediction 1033 1050 - -
Trre6g00888 1126 SUPERFAMILY FYVE/PHD zinc finger 697 758 IPR011011 -
Trre6g00888 1126 ProSiteProfiles Zinc finger PHD-type profile. 715 760 IPR019787 -
Trre6g00888 1126 SMART PHD_3 759 813 IPR001965 -
Trre6g00888 1126 SMART PHD_3 717 758 IPR001965 -
Trre6g00888 1126 Pfam Agenet domain 25 97 IPR008395 -
Trre6g00888 1126 SMART agenet_At_2 104 161 IPR014002 -
Trre6g00888 1126 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 905 975 IPR016181 -
Trre6g00888 1126 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 854 1015 IPR000182 GO:0016747
Trre6g00888 1126 Pfam PHD-finger 717 758 IPR019787 -
Trre6g00888 1126 CDD Tudor_Agenet_AtDUF_rpt1_3 25 97 - -
Trre6g00888 1126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 709 770 IPR013083 -
Trre6g00888 1126 MobiDBLite consensus disorder prediction 1095 1110 - -
Trre6g00888 1126 Gene3D - 878 989 - -
Trre6g00888 1126 MobiDBLite consensus disorder prediction 1033 1061 - -
Trre6g00888 1126 PANTHER PHD FINGER PROTEIN 12 449 1086 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00888 Trre-Chr6 6788032 6794469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00888 30 963 PHD Transcription Factor Family AT5G58610 37.449 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre6g00888 Agenet 1.3e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00888 - - cam:101498411 1557.35