Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00836 ATGCTGCAGGAGCTTCCAATTCATCAAAGAGCAGAAGCAGTAAACAGTTTAGTTTATGAAGCAAATGCAAGAGTTAGAGATCCTGTTTATGGATGTGTTGGAGCCATATCATACCTTCAAAGTCAAGTTTCACAATTACAAATGCAACTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAAATGCAGCAAGAATCTGCTACAGTTACTGACTCATTACCAACACATGTTGACCAAGATGACAAATTGATGCTCCTATCTGAAAATAATAATTGCTATGAAGTCCTTCCACAATATCTCAACTTTCCATCTTCTTCTTCCTCATCTTCCAATGTATTCCAAGATTATGAGCCTCTTAAGAGGGAGACTTTTTGGACTTAA 381 0.3832 MLQELPIHQRAEAVNSLVYEANARVRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQESATVTDSLPTHVDQDDKLMLLSENNNCYEVLPQYLNFPSSSSSSSNVFQDYEPLKRETFWT 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00836 126 Pfam Lateral organ boundaries (LOB) domain 1 54 IPR004883 -
Trre6g00836 126 Coils Coil 36 56 - -
Trre6g00836 126 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 79 - -
Trre6g00836 126 ProSiteProfiles LOB domain profile. 1 57 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00836 Trre-Chr6 6391623 6392833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00836 1 126 AS2 family AT2G30130 56.338 2.54e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre6g00836 LOB 4.8e-16 No_clan