Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00835 ATGGGATCAGGTTCCTCACCTTGTGCTTCTTGCAAATTGTTGAGAAGGCGTTGCACACAAGAATGCATCTTTGCTCCTTATTTTCCTTCTGATGATCCACGCAAGTTTGCCATTGTTCATAAGGTCTTTGGAGCTAGCAATATCAGCAAAATGCTGCAGGAGCTTCCAATTCATCAAAGAGCAGAAGCAGTAAACAGTTTAGTTTATGAAGCAAATGCAAGAGTTAGAGATCCTGTTTATGGATGTGTTGGAGCCATATCATACCTTCAAAGTCAAGTTTCACAATTACAAATGCAACTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAAATGCAGCAAGAATCTGCTACAGTTACTGACTCATTACCAACACATGTTGACCAAGATGACAAATTGATGCTCCTATCTGAAAATAATAATTGCTATGAAGTCCTTCCACAATATCTCAACTTTCCATCTTCTTCTTCCTCATCTTCCAATGTATTCCAAGATTATGAGCCTCTTAAGAGGGAGACTTTTTGGACTTAA 531 0.3955 MGSGSSPCASCKLLRRRCTQECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPIHQRAEAVNSLVYEANARVRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQESATVTDSLPTHVDQDDKLMLLSENNNCYEVLPQYLNFPSSSSSSSNVFQDYEPLKRETFWT 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00835 176 Coils Coil 86 106 - -
Trre6g00835 176 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Trre6g00835 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 124 - -
Trre6g00835 176 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00835 Trre-Chr6 6391623 6392983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00835 2 176 AS2 family AT2G30130 63.874 3.52e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre6g00835 LOB 3.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00835 - - gmx:100819419 269.24