Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00816 ATGACCTCTTCATTTTTTTCTGACCTTCTTAATTCTCCAACCGACCAAAACCTCAGAGACACCGAAAGATCTCATAATAATAATAATCAAGTGTTGTCGGATCAAAACGGGTCGGGTTTGCCCAAGTTCAAATCCACACCTCCTCCATCTCTTCCTCTTTCTCCTACACCTCTTTTTTCTCCTTCTTCTTACTTTTCTATCCCTCCTGGCTTCTCCCTCTCTGAGCTTCTTGATTCTCCTGTTCTCCTTAACTCTTCTCATATTCTTCCATCTCCAACAACTGGATCATTTGCAAATACTCAAAGTCTTAATAATTGGAAAAACAATTATGGTGAAAAGCAGCAGAATGTGAAAGCAGAAGATAAAACCTTCTCAAATTTCTCCTTCCAAGCTCAACCTGTGCTTAATCAACCTTCAGCCGCCACAACTCAAAACAATGGATGGAGTATGGTGAAAACAGAAAACTCTTCTTCAATGCAGAGTTTCAAACCAGAGAATAATAATTCTGCTAGTGAACAAAATAACAACAAAAGAGGTTTACAATCAGAAAATTACAATAATTATCAAACTCAAGTTACTCAACCACAGCAGCAACAAGTTCAAACACTTAGTAGAAGATCAGATGATGGATACAATTGGAGAAAATATGGACAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGCTATTATAAATGCACATATCCAAATTGTCCAACAAAGAAAAAAGTTGAAAAAAGAGCTATAGATGGACAAATTACTGAGATAGTTTATAAAGGTACTCATAATCATCCTAAGCCTTTGGCTAATAAAAGGAACATGAATTCAATGTCTTCCTCGTCGTCGTCGGTTGCTAATCCTCCTTCGAATGGTTTTGAAAATGAAATGCAAATGGTTTTGGTTACTACGCCGGAGAATTCGTCCATATCGATTGGAGATGATGATTTTGAGCAGAGTTCTCATAAATCAGGTGGTGATCATGAGTTTTGTGATGATGATCAACCCGATGCCAAAAAATGGAGAATAGAAGGTGAAAATGAGGGGATATCATCAGGAGTTGGAAATAGAACAGTGAGGGAACCTAGAGTTGTGGTTCAGACAACAAGTGACATTGATATTCTAGATGATGGGTATAGATGGAGAAAATATGGGCAGAAAGTAGTCAAGGGAAATCCAAATCCAAGGAGTTACTATAAGTGTACAAACCCAGGATGTCCAGTGAGGAAACATGTGGAAAGAGCCTCACAAGATCTAAGAGCAGTAATCACAACCTATGAAGGAAAACACAATCATGATGTTCCTGCGCCACGTGGCAGTGGAAACCACTCTATCAACAAACCACAACCAAATATGCCAACTATGAACAACAACAATAATTCCAACAATGGTTTCTTCAACCATCAGATGATGCAAAACAATGGATTTCCAATGGATTCTTACATGAATAATATGAATCAACGTGTTAATAATATTGTTAGAGGTAGAGCCAAGGATGAGCCTGTAGAAGATAACTCCTTTTTAGAATCTTTGCTATCTTGA 1539 0.3762 MTSSFFSDLLNSPTDQNLRDTERSHNNNNQVLSDQNGSGLPKFKSTPPPSLPLSPTPLFSPSSYFSIPPGFSLSELLDSPVLLNSSHILPSPTTGSFANTQSLNNWKNNYGEKQQNVKAEDKTFSNFSFQAQPVLNQPSAATTQNNGWSMVKTENSSSMQSFKPENNNSASEQNNNKRGLQSENYNNYQTQVTQPQQQQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVEKRAIDGQITEIVYKGTHNHPKPLANKRNMNSMSSSSSSVANPPSNGFENEMQMVLVTTPENSSISIGDDDFEQSSHKSGGDHEFCDDDQPDAKKWRIEGENEGISSGVGNRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASQDLRAVITTYEGKHNHDVPAPRGSGNHSINKPQPNMPTMNNNNNSNNGFFNHQMMQNNGFPMDSYMNNMNQRVNNIVRGRAKDEPVEDNSFLESLLS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00816 512 MobiDBLite consensus disorder prediction 428 462 - -
Trre6g00816 512 MobiDBLite consensus disorder prediction 315 334 - -
Trre6g00816 512 FunFam WRKY transcription factor 33 361 427 - -
Trre6g00816 512 SUPERFAMILY WRKY DNA-binding domain 366 434 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g00816 512 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 77 462 IPR044810 GO:0003700
Trre6g00816 512 MobiDBLite consensus disorder prediction 306 334 - -
Trre6g00816 512 Pfam WRKY DNA -binding domain 375 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00816 512 Pfam WRKY DNA -binding domain 208 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00816 512 MobiDBLite consensus disorder prediction 152 226 - -
Trre6g00816 512 SUPERFAMILY WRKY DNA-binding domain 206 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g00816 512 ProSiteProfiles WRKY domain profile. 208 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00816 512 SMART WRKY_cls 374 433 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00816 512 SMART WRKY_cls 207 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00816 512 MobiDBLite consensus disorder prediction 152 207 - -
Trre6g00816 512 MobiDBLite consensus disorder prediction 441 462 - -
Trre6g00816 512 MobiDBLite consensus disorder prediction 1 43 - -
Trre6g00816 512 Gene3D WRKY domain 193 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g00816 512 ProSiteProfiles WRKY domain profile. 369 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g00816 512 MobiDBLite consensus disorder prediction 1 55 - -
Trre6g00816 512 FunFam WRKY transcription factor 195 268 - -
Trre6g00816 512 Gene3D WRKY domain 361 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00816 Trre-Chr6 6230938 6234771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00816 1 511 WRKY Transcription Factor Family AT2G38470 45.848 1.06e-110 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre6g00816 WRKY 5.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00816 K13424 - gmx:100127421 536.184