LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g00808	ATGGCTTATCAAAAAGTTACACTAAACCTTAAAATGAAAGATGTTGAACTTGTAAAACCATCAAAGTTCACTCCTTCTTGTATTCTTTCTCTTTCTACACTTGACAATAGAGGTATCTATAATAACCATTGTCAAACTGTTCATGTATATCGATCATCAGAAACTCGTGATTTTGATTCCAGTTTTAACCTTTGTCATGTATTCAAAGAAGCACTCTCAAAGGCTTTGTTCTATTATTATCCTTTTGCAGGTAGACTAATGAAACATGCTGATGATGGAAAACTTAGAGTCAATTGCAACCCTGATGCAGAAAACTATGGTGTTCCATTCTTGGAAGCAATTGCTAATTGCACCCTTTCTTCAATAAATTATTTAGACAATACTGACACAGAAATTGCAAAGCATTTGGTGCTTAATCCTCAAGATTTAAGTTATCCTTTAGTGTTCAAGGTAACAAAATTTCTTTGTGGGGGTTTCACAATTGGAATGGGTGTGTTACATGCTGTTTGTGATGGATTTGGTGCATCACAATTCTTCAACACAATTGTTGAACTTGCAAGAGGAAGAATTGAGCCATCAGTGAAACCTGTATGGGAAAGAGAGAGACTAGTTGGATCAATAACTAAACAACCATTTCCACTATTCCCCATGAACAAAGAATCTATAGCATTTTCACCTTTTTTGAATCAAACCAATAGTACTAGTATTAAGCAATATTGTTTTAAAGTGGAGAGTGAAATGATAACAAAACTTAAGTTAAGTTTAATGAAGGAAAGTGAAAATATAAGGGTCACAACATTTGAATCACTTGCAGCTTATATTTGGAGATCAAGAGCAAGAGCCTTAAAACTTAACAACAATGGAGATACAATGTTGACTGTGTTAGTTGGTATGAGAAGAAATTTGAAAGGTTATGATCCAATACCAAAAGGGTTTTATGGTAATTCTGTTATGGAAGCAAACATTGTGTTAAAAGTGAATGATCTAAATGAAATGTCACTCTATGAAATTGTTAAGTTGATCAAAGAGGCTAAAAATGTTGCTTCAAGTGCCGATTATGTCAAAAACACAATCGACTCTTTGGAGACGAATTTTAAGGATCGTGTTAACATGGTAAAAAGTACCGGTGCGGTAACGGTTTTGACTGAGTGGAAGCATTTGGGTTTTATGGGTGAAAATGTAGATTTTGGAGGGTATGAAATAGTAAATTTAGTACCAGCACCATGCAACTTATTTGCATCTGTGGAAATGAGTGTTATCTCATCTTCTAATAAATTTGATGATGCTGATCCATCAATGAAAGGAGGAATTAATCTTTTTACATCACTTCCTGTTGCTGCCATGCCTAAGTTCAAGGAAGAAATTGAAGCTTTAAGATCTCTTAGTTGA	1389	0.342	MAYQKVTLNLKMKDVELVKPSKFTPSCILSLSTLDNRGIYNNHCQTVHVYRSSETRDFDSSFNLCHVFKEALSKALFYYYPFAGRLMKHADDGKLRVNCNPDAENYGVPFLEAIANCTLSSINYLDNTDTEIAKHLVLNPQDLSYPLVFKVTKFLCGGFTIGMGVLHAVCDGFGASQFFNTIVELARGRIEPSVKPVWERERLVGSITKQPFPLFPMNKESIAFSPFLNQTNSTSIKQYCFKVESEMITKLKLSLMKESENIRVTTFESLAAYIWRSRARALKLNNNGDTMLTVLVGMRRNLKGYDPIPKGFYGNSVMEANIVLKVNDLNEMSLYEIVKLIKEAKNVASSADYVKNTIDSLETNFKDRVNMVKSTGAVTVLTEWKHLGFMGENVDFGGYEIVNLVPAPCNLFASVEMSVISSSNKFDDADPSMKGGINLFTSLPVAAMPKFKEEIEALRSLS	462

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g00808	462	Gene3D	-	228	455	IPR023213	-
	Trre6g00808	462	Gene3D	-	5	213	IPR023213	-
	Trre6g00808	462	PANTHER	ACYL TRANSFERASE 4	9	456	-	-
	Trre6g00808	462	Pfam	Transferase family	11	457	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g00808	Trre-Chr6	6206323	6208592	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g00808	8	407	Monolignol Biosynthesis Gene Families	AT5G48930	27.711	2.16e-34	132

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g00808	K20240		-	gmx:100801843	424.091