Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00785 ATGACCTCAGAACCAGTCTCAAAATATCACCATAAGGCAGAGGAGATACTTAAGTTATTGAAGCCGATCATTGATGCTTTTGCTAATTCTGAGCTAGCCTCCGACGAAGTGCTTAGTAAAACATCCGAAGAACTTGGTCATGCTGTTGATGAATTAAAGGAGCATGTTGAGAATTGGCACCTATTGTCTAGCAAAGTTTACTTTGTTATGGAAGTTGAACCCTTGATATCTAGGATTCGGACTTCAGGTCTCAAGGTCTTGCAGCAGCTGAAGGTTTCAAAGCAATTTCCCAATGATGAATTGAGTTCTGAACATTTGGAGAACTGTGTTCAGAAACTTAAGCTTTTAGGACTTGAAGAAAACTCATCCGTCATTAAGGAAGCTATTATGGAACAACTGGATGGTGCAGGACCTAGTTCAGAGATCCTGGAAAAAATTGCTGATAGCCTGGATCTAAGATCTAACGAGGAGGTTCTGATTGAGGCTGTGGCCCTAGAAAAGTTGAAGGAGAATGCTGAACAGACTGAAAAGACTGCAGAAGCTGAATACATTGATCAAATTATTGCTGTTATAACGCGTATGCATGAGCGCCTCGTTATGCTTAAGCAAGCCCAAAGTTCCAGTCCTGTTCCAGTACCTGCTGATTTTTGTTGTCCTCTTTCTTTAGAGTTGATGACTGATCCGGTGATCGTGGCTTCAGGGCAAACTTATGAGCGGGCTTTTATCAAGAACTGGATTGATCTTGGTCTTACTGTTTGTCCAAAGACACATCAGACTCTGGCTCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTGAGACTGGTTGACCCCACAAAGTCAACAACCTTAAATCAAGCATCGATCCTTCATGGGTATATGGAGTCTGGTACAACCAGGGAATCTCCTCTTTTTCCTCATTCCAGGAGTAACCTGCCATCCTCACCCGAGTCCGCTCGTTCTCGTTCTTTTAGTTCGCCAGGTAATAACATACCTTCTTCAGGTGGAATCCAGCGAGAGGGAACATCACCTGTGCACCCTCGTTCAACTTCAGAAGGTTCCTTGAGTGGCATAATTAATGGGCAATATATGGATGCTGCTAGAACATCACCCACGGCTTTAGACGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTCGATTCAATTGGCCAACCATCAATATCACCATCTAGAAGAGAATCTTCCGGTGCCTTCAGCTCCGAACTATCTCAAAACCATGTTAGAGCTGTATCTGATTCTGGTGCATTTTCTGATGCAAATTATCAAGAAACACAAGGTGATGACAGCAATGCTTCTCAACTGTCAACAAGTCCAGGCTACAGTAGAGATACTTCTGGCGAACTAAATCCAGGACCAGATGCTGCTGGTTCTGCTCCCATGCCATCAATGCAGAGGGAACCTGAGTTCCCACCCCGATTGATGGAGGCAAGGTCTCGGAGCCAAGCTATATGGAGGAGGCCATCAGAAAGGCTGGTTCCTAGGATAATATCTTCTTCTGTTGAGCCAAGAGTTGATCTTTCTGGTATTGAGGCACAGGTTCGGAGTTTAGTTGAGGGCTTGAGGAGCATTGATCTTGACATTCAGAGAGAGGCAACTTCAGAAATCCGTCTTCTTGCTAAACACAATATGGATAATCGAATTGCAATTGCAAATTGTGGAGCCATTAACATATTAGTCGACTTACTTCAATCAGAAGATTCAAGGATCCAGGAAAATGCTGTTACAGCACTTCTTAACTTATCGATCAATGATAACAACAAAACTGCAATTGCAAATGCCGGTGCAATTGAACCTCTGATTCATGTTCTTGAGCACGGGAGCCCAGAAGCGAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTGTCGGTGATTGAGGAAAACAAGGTTAACATAGGGAGATCTGGGGCAATTAGACCACTTGTAGATTTATTAGGGAATGGAACCCCGAGGGGAAAAAAGGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCACGAGAACAAGAATCGGATTGTGCAAGCTGGTGCCGTAAAGCACCTTGTGGAGTTGATGGACCCAGCGGCTGGAATGGTTGACAAGGCTGTGGCTGTCTTAGCAAACCTTGCCACAATTCCAGAAGGCAGAATTGCAATTGGCCAGGAAGGTGGGATTCCTGTTCTAGTTGAAGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAACGCAGCAGCAGCTCTTCTACATCTTTGCTTACACAGTAGTAGATTCTTAAGCATGGTGCTCCAACACGGAGCCGTACCACCATTAGTAGCTTTATCACAATCAGGCACACCAAGGGCCAAAGAAAAGGCCCAAGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGGAATTCTGGGAGGGGCTGA 2445 0.4429 MTSEPVSKYHHKAEEILKLLKPIIDAFANSELASDEVLSKTSEELGHAVDELKEHVENWHLLSSKVYFVMEVEPLISRIRTSGLKVLQQLKVSKQFPNDELSSEHLENCVQKLKLLGLEENSSVIKEAIMEQLDGAGPSSEILEKIADSLDLRSNEEVLIEAVALEKLKENAEQTEKTAEAEYIDQIIAVITRMHERLVMLKQAQSSSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVRLVDPTKSTTLNQASILHGYMESGTTRESPLFPHSRSNLPSSPESARSRSFSSPGNNIPSSGGIQREGTSPVHPRSTSEGSLSGIINGQYMDAARTSPTALDDRSASSDESSVDSIGQPSISPSRRESSGAFSSELSQNHVRAVSDSGAFSDANYQETQGDDSNASQLSTSPGYSRDTSGELNPGPDAAGSAPMPSMQREPEFPPRLMEARSRSQAIWRRPSERLVPRIISSSVEPRVDLSGIEAQVRSLVEGLRSIDLDIQREATSEIRLLAKHNMDNRIAIANCGAINILVDLLQSEDSRIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLEHGSPEAKENSAATLFSLSVIEENKVNIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRIAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSSRFLSMVLQHGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00785 814 MobiDBLite consensus disorder prediction 308 367 - -
Trre6g00785 814 FunFam RING-type E3 ubiquitin transferase 211 286 - -
Trre6g00785 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 694 735 IPR000225 GO:0005515
Trre6g00785 814 SUPERFAMILY RING/U-box 202 288 - -
Trre6g00785 814 PANTHER U BOX DOMAIN-CONTAINING 5 802 - -
Trre6g00785 814 Pfam Armadillo/beta-catenin-like repeat 601 640 IPR000225 GO:0005515
Trre6g00785 814 Pfam Armadillo/beta-catenin-like repeat 644 681 IPR000225 GO:0005515
Trre6g00785 814 Pfam Armadillo/beta-catenin-like repeat 562 599 IPR000225 GO:0005515
Trre6g00785 814 ProSiteProfiles U-box domain profile. 211 285 IPR003613 GO:0004842|GO:0016567
Trre6g00785 814 MobiDBLite consensus disorder prediction 436 494 - -
Trre6g00785 814 MobiDBLite consensus disorder prediction 436 462 - -
Trre6g00785 814 Gene3D - 514 809 IPR011989 -
Trre6g00785 814 CDD RING-Ubox_PUB 213 265 IPR045210 -
Trre6g00785 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 571 613 IPR000225 GO:0005515
Trre6g00785 814 SMART Ubox_2 215 278 IPR003613 GO:0004842|GO:0016567
Trre6g00785 814 SMART arm_5 601 641 IPR000225 GO:0005515
Trre6g00785 814 SMART arm_5 642 682 IPR000225 GO:0005515
Trre6g00785 814 SMART arm_5 723 763 IPR000225 GO:0005515
Trre6g00785 814 SMART arm_5 683 722 IPR000225 GO:0005515
Trre6g00785 814 SMART arm_5 560 600 IPR000225 GO:0005515
Trre6g00785 814 SUPERFAMILY ARM repeat 531 803 IPR016024 -
Trre6g00785 814 Pfam U-box domain 212 282 IPR003613 GO:0004842|GO:0016567
Trre6g00785 814 Coils Coil 155 185 - -
Trre6g00785 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 653 695 IPR000225 GO:0005515
Trre6g00785 814 FunFam RING-type E3 ubiquitin transferase 515 809 - -
Trre6g00785 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 291 IPR013083 -
Trre6g00785 814 MobiDBLite consensus disorder prediction 380 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00785 Trre-Chr6 6074645 6077975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00785 172 814 U-box Gene Family AT2G23140 61.751 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00785 - - tpra:123913325 1496.1