Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00784 ATGAAGATATCGATGTTGAAAATGCTTGTTGACAGCATATCCTCATTTTTGCATTTATCATTTTCTGGAAACATGACCTCAGAACCAGTCTCAAAATATCACCATAAGGCAGAGGAGATACTTAAGTTATTGAAGCCGATCATTGATGCTTTTGCTAATTCTGAGCTAGCCTCCGACGAAGTGCTTAGTAAAACATCCGAAGAACTTGGTCATGCTGTTGATGAATTAAAGGAGCATGTTGAGAATTGGCACCTATTGTCTAGCAAAGTTTACTTTGTTATGGAAGTTGAACCCTTGATATCTAGGATTCGGACTTCAGGTCTCAAGGTCTTGCAGCAGCTGAAGGTTTCAAAGCAATTTCCCAATGATGAATTGAGTTCTGAACATTTGGAGAACTGTGTTCAGAAACTTAAGCTTTTAGGACTTGAAGAAAACTCATCCGTCATTAAGGAAGCTATTATGGAACAACTGGATGGTGCAGGACCTAGTTCAGAGATCCTGGAAAAAATTGCTGATAGCCTGGATCTAAGATCTAACGAGGAGGTTCTGATTGAGGCTGTGGCCCTAGAAAAGTTGAAGGAGAATGCTGAACAGACTGAAAAGACTGCAGAAGCTGAATACATTGATCAAATTATTGCTGTTATAACGCGTATGCATGAGCGCCTCGTTATGCTTAAGCAAGCCCAAAGTTCCAGTCCTGTTCCAGTACCTGCTGATTTTTGTTGTCCTCTTTCTTTAGAGTTGATGACTGATCCGGTGATCGTGGCTTCAGGGCAAACTTATGAGCGGGCTTTTATCAAGAACTGGATTGATCTTGGTCTTACTGTTTGTCCAAAGACACATCAGACTCTGGCTCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTGAGACTGGTTGACCCCACAAAGTCAACAACCTTAAATCAAGCATCGATCCTTCATGGGTATATGGAGTCTGGTACAACCAGGGAATCTCCTCTTTTTCCTCATTCCAGGAGTAACCTGCCATCCTCACCCGAGTCCGCTCGTTCTCGTTCTTTTAGTTCGCCAGGTAATAACATACCTTCTTCAGGTGGAATCCAGCGAGAGGGAACATCACCTGTGCACCCTCGTTCAACTTCAGAAGGTTCCTTGAGTGGCATAATTAATGGGCAATATATGGATGCTGCTAGAACATCACCCACGGCTTTAGACGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTCGATTCAATTGGCCAACCATCAATATCACCATCTAGAAGAGAATCTTCCGGTGCCTTCAGCTCCGAACTATCTCAAAACCATGTTAGAGCTGTATCTGATTCTGGTGCATTTTCTGATGCAAATTATCAAGAAACACAAGGTGATGACAGCAATGCTTCTCAACTGTCAACAAGTCCAGGCTACAGTAGAGATACTTCTGGCGAACTAAATCCAGGACCAGATGCTGCTGGTTCTGCTCCCATGCCATCAATGCAGAGGGAACCTGAGTTCCCACCCCGATTGATGGAGGCAAGGTCTCGGAGCCAAGCTATATGGAGGAGGCCATCAGAAAGGCTGGTTCCTAGGATAATATCTTCTTCTGTTGAGCCAAGAGTTGATCTTTCTGGTATTGAGGCACAGGTTCGGAGTTTAGTTGAGGGCTTGAGGAGCATTGATCTTGACATTCAGAGAGAGGCAACTTCAGAAATCCGTCTTCTTGCTAAACACAATATGGATAATCGAATTGCAATTGCAAATTGTGGAGCCATTAACATATTAGTCGACTTACTTCAATCAGAAGATTCAAGGATCCAGGAAAATGCTGTTACAGCACTTCTTAACTTATCGATCAATGATAACAACAAAACTGCAATTGCAAATGCCGGTGCAATTGAACCTCTGATTCATGTTCTTGAGCACGGGAGCCCAGAAGCGAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTGTCGGTGATTGAGGAAAACAAGGTTAACATAGGGAGATCTGGGGCAATTAGACCACTTGTAGATTTATTAGGGAATGGAACCCCGAGGGGAAAAAAGGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCACGAGAACAAGAATCGGATTGTGCAAGCTGGTGCCGTAAAGCACCTTGTGGAGTTGATGGACCCAGCGGCTGGAATGGTTGACAAGGCTGTGGCTGTCTTAGCAAACCTTGCCACAATTCCAGAAGGCAGAATTGCAATTGGCCAGGAAGGTGGGATTCCTGTTCTAGTTGAAGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAACGCAGCAGCAGCTCTTCTACATCTTTGCTTACACAGTAGTAGATTCTTAAGCATGGTGCTCCAACACGGAGCCGTACCACCATTAGTAGCTTTATCACAATCAGGCACACCAAGGGCCAAAGAAAAGGCCCAAGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGGAATTCTGGGAGGGGCTGA 2517 0.4394 MKISMLKMLVDSISSFLHLSFSGNMTSEPVSKYHHKAEEILKLLKPIIDAFANSELASDEVLSKTSEELGHAVDELKEHVENWHLLSSKVYFVMEVEPLISRIRTSGLKVLQQLKVSKQFPNDELSSEHLENCVQKLKLLGLEENSSVIKEAIMEQLDGAGPSSEILEKIADSLDLRSNEEVLIEAVALEKLKENAEQTEKTAEAEYIDQIIAVITRMHERLVMLKQAQSSSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVRLVDPTKSTTLNQASILHGYMESGTTRESPLFPHSRSNLPSSPESARSRSFSSPGNNIPSSGGIQREGTSPVHPRSTSEGSLSGIINGQYMDAARTSPTALDDRSASSDESSVDSIGQPSISPSRRESSGAFSSELSQNHVRAVSDSGAFSDANYQETQGDDSNASQLSTSPGYSRDTSGELNPGPDAAGSAPMPSMQREPEFPPRLMEARSRSQAIWRRPSERLVPRIISSSVEPRVDLSGIEAQVRSLVEGLRSIDLDIQREATSEIRLLAKHNMDNRIAIANCGAINILVDLLQSEDSRIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLEHGSPEAKENSAATLFSLSVIEENKVNIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRIAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSSRFLSMVLQHGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRG 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00784 838 PANTHER U BOX DOMAIN-CONTAINING 29 826 - -
Trre6g00784 838 MobiDBLite consensus disorder prediction 332 391 - -
Trre6g00784 838 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Trre6g00784 838 SUPERFAMILY ARM repeat 555 827 IPR016024 -
Trre6g00784 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 677 719 IPR000225 GO:0005515
Trre6g00784 838 SUPERFAMILY RING/U-box 226 312 - -
Trre6g00784 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 595 637 IPR000225 GO:0005515
Trre6g00784 838 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Trre6g00784 838 SMART arm_5 707 746 IPR000225 GO:0005515
Trre6g00784 838 SMART arm_5 666 706 IPR000225 GO:0005515
Trre6g00784 838 SMART arm_5 747 787 IPR000225 GO:0005515
Trre6g00784 838 SMART arm_5 625 665 IPR000225 GO:0005515
Trre6g00784 838 SMART arm_5 584 624 IPR000225 GO:0005515
Trre6g00784 838 MobiDBLite consensus disorder prediction 460 518 - -
Trre6g00784 838 MobiDBLite consensus disorder prediction 460 486 - -
Trre6g00784 838 Coils Coil 179 209 - -
Trre6g00784 838 FunFam RING-type E3 ubiquitin transferase 539 833 - -
Trre6g00784 838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 315 IPR013083 -
Trre6g00784 838 CDD RING-Ubox_PUB 237 289 IPR045210 -
Trre6g00784 838 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Trre6g00784 838 Pfam Armadillo/beta-catenin-like repeat 668 705 IPR000225 GO:0005515
Trre6g00784 838 Pfam Armadillo/beta-catenin-like repeat 625 664 IPR000225 GO:0005515
Trre6g00784 838 Pfam Armadillo/beta-catenin-like repeat 586 623 IPR000225 GO:0005515
Trre6g00784 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 718 759 IPR000225 GO:0005515
Trre6g00784 838 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Trre6g00784 838 MobiDBLite consensus disorder prediction 404 446 - -
Trre6g00784 838 Gene3D - 538 833 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00784 Trre-Chr6 6074573 6077975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00784 196 838 U-box Gene Family AT2G23140 61.751 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00784 - - tpra:123913325 1537.7