Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00782 ATGGATAGTTCAAATAATATGGTGGATTGCGGTAGTATTCATCATGATGAAGTTATGAAAGTTGACAACATTAATGATGATGATGATGATGTATGTTGGGAGCCTGCAGCGGGGATGTGTTTTTCTTGTTTAGATGAAGTTAAATCTTTTTATGGAGAGTATGCTTTGAAAAAGGGTTTTCGGTGGAAGATTAGAACATCAAGAAAAGGACCGGACGGAGAAATATGCTACTTAATTCTAGCATGCTCAAGAGAGGGGTCTAAAGTCTCAAAGGTTTCGTGTATATCGAAGACACTTCCGGAAAAAGTGAAAAGTTGTCCTGCTAAGATTTGTGTTAAGATGGAAGAAGATGGATTGTGGTACATTAGAAAATTTGAAGCCGACCATTCTCACGAGACCAGCCCTACAAAGGCAAGGACAGAATTGAAGCCGCAAATGGTTAGATTTGAAAAATTGTGCAAGCATTTCTATGATATTGCTGAAGTAGCCGCAAAGTCCGAAGATGGAACTAAGGCACTCCATGAAACATTACATCAGTTTAATTCTAATTTGCCCACCATGGATGTTTTGGAGTTCCTTCATATTGAAGAAGGGAGAAACAAGATTCAAGCAGGGATCCTACTCCATCATTCTTTGTTCTTCATGAAGGGATTCAAATGGTAG 663 0.3876 MDSSNNMVDCGSIHHDEVMKVDNINDDDDDVCWEPAAGMCFSCLDEVKSFYGEYALKKGFRWKIRTSRKGPDGEICYLILACSREGSKVSKVSCISKTLPEKVKSCPAKICVKMEEDGLWYIRKFEADHSHETSPTKARTELKPQMVRFEKLCKHFYDIAEVAAKSEDGTKALHETLHQFNSNLPTMDVLEFLHIEEGRNKIQAGILLHHSLFFMKGFKW 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00782 220 Pfam FAR1 DNA-binding domain 49 133 IPR004330 -
Trre6g00782 220 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 16 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00782 Trre-Chr6 6063692 6067463 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre6g00782 FAR1 1.3e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00782 - - cam:101510307 202.216