LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g00775	ATGGAGAGTGATATGAAACCGAATGTGTTAATGGAACGATATGAGTTAGGGAGGTTACTTGGTCAGGGAACGTTCGGAAAGGTTTACTATGCACGGAGTAGGGTAACTAACCAGAGTGTCGCCATTAAAGCGATTGACAAAGATAAGGTTATGAGAACCGGTCAAGTTGATCGAACCAAGCGTGAGATATGTGTTATGAAATTGGCTAGACATCCGAATATTATACAGCTGTTTGAGGTTATGGCAACTAAGAGTAAAATTTACTTTGTTATCGAGTATGCTAAAGGCGGTGAGCTTTTTAACAAGGTGGCTAAAGGAAAACTCAAAGAAGAAGTTGCACACAGATATTTTAAGCAGTTAATCAATGCGGTCGATTTTTGTCACAGTAGAGGCGTGTATCATCGAGACATTAAGCCTGAAAACATTCTATTGGATGAAAATGGAAATTTGAAGGTTTCTGATTTTGGGTTAAGTGCTCTTGTGGAACTAAATCAACAGGATATGATTCTCCGTACGCCTTGTGGTACTCCGGCCTATGTTGCTCCGGAAGTCATCAAAAGGAAAGGATATGATGGTGCGAAAGCCGATATTTGGTCTTGTGGAATAGTTCTATTTGTTTTATTGGCAGGTTATCTCCCTTTTCATGACTCAAATTTGATAGAGATGTATAGGAAGATAAGCAAAGCAGAATTAAAATGTCCGAGTTGGTTTCGACCAGAAGTGTGCACGCTATTAAGCGAAATATTGGATCCAAAACCCGACACTAGGATTTCCATAGAAAAGATTAAGGAACATTGTTGGTTTAAAAATGGACCAAATGCTAGAAATAAAAAACCAAAAGCGGAAAACAGCAGCGTCTCTTCTTCAGGTACAGTTGTTTCTGATCAAAGTGATGAAAACAAAAACAGTCCAGAAGCTGAAGCAAAGGAAGAAGAGTCGGTCGTGCCGATCAGTATAAATGCGTTCGATATCATCTCCCTTTCAGCTAGTTTTGATCTTTCTAGATTCTTTAAAGAGGATGTTCAGAAAAAAGAAGCGAGATTTAGTTCGAAACTACCTGCATCGGTCATTATCTCGAAGATGGAAGACATTGCTAAGCAACTGAGGATGAAAATTAAGAAAAAGGCTGCTGGTTTGTTGAAATTAGAGGGATTCGATGAAGGTAGGAAAGGAGTTTTATCTATTGATGCAGAGATCTTTGAGGTTACTCCTAATTTCCATTTAGTCGAGGTGAAAAAATCAAATGGAGATACATTGGAATATCAGAAAATATTGAAAGAGGATATTAGGCCAGGTCTTCAGGATATTGTTTGGGTGTGGCAAACCGACCATCAACTGCAATCACAACAATCAGATCAACAGATACCGATACATGATCAGCAGCAACAACAACCACAGTCATAA	1404	0.3889	MESDMKPNVLMERYELGRLLGQGTFGKVYYARSRVTNQSVAIKAIDKDKVMRTGQVDRTKREICVMKLARHPNIIQLFEVMATKSKIYFVIEYAKGGELFNKVAKGKLKEEVAHRYFKQLINAVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALVELNQQDMILRTPCGTPAYVAPEVIKRKGYDGAKADIWSCGIVLFVLLAGYLPFHDSNLIEMYRKISKAELKCPSWFRPEVCTLLSEILDPKPDTRISIEKIKEHCWFKNGPNARNKKPKAENSSVSSSGTVVSDQSDENKNSPEAEAKEEESVVPISINAFDIISLSASFDLSRFFKEDVQKKEARFSSKLPASVIISKMEDIAKQLRMKIKKKAAGLLKLEGFDEGRKGVLSIDAEIFEVTPNFHLVEVKKSNGDTLEYQKILKEDIRPGLQDIVWVWQTDHQLQSQQSDQQIPIHDQQQQQPQS	467

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g00775	467	FunFam	Non-specific serine/threonine protein kinase	94	275	-	-
	Trre6g00775	467	FunFam	Aurora kinase A	6	97	-	-
	Trre6g00775	467	ProSiteProfiles	Protein kinase domain profile.	14	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00775	467	Pfam	Protein kinase domain	14	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00775	467	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	6	433	-	-
	Trre6g00775	467	Gene3D	Phosphorylase Kinase; domain 1	8	100	-	-
	Trre6g00775	467	MobiDBLite	consensus disorder prediction	277	299	-	-
	Trre6g00775	467	ProSitePatterns	Protein kinases ATP-binding region signature.	20	43	IPR017441	GO:0005524
	Trre6g00775	467	Pfam	NAF domain	316	374	IPR004041	GO:0007165
	Trre6g00775	467	Gene3D	Transferase(Phosphotransferase) domain 1	101	317	-	-
	Trre6g00775	467	SMART	serkin_6	14	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g00775	467	SUPERFAMILY	Protein kinase-like (PK-like)	10	292	IPR011009	-
	Trre6g00775	467	CDD	CIPK_C	320	434	-	-
	Trre6g00775	467	ProSiteProfiles	NAF domain profile.	314	338	IPR018451	GO:0007165
	Trre6g00775	467	MobiDBLite	consensus disorder prediction	273	312	-	-
	Trre6g00775	467	FunFam	Non-specific serine/threonine protein kinase	314	438	-	-
	Trre6g00775	467	Gene3D	Kinase associated domain 1, KA1	318	439	-	-
	Trre6g00775	467	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	132	144	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g00775	Trre-Chr6	6035691	6037094	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g00775	6	443	CBL-interacting serine-threonine protein kinases	AT5G58380	63.839	0.0	605

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Trre6g00775		Pkinase	8.3e-74	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g00775	-		-	gmx:100790905	696.427