Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00752 ATGCCTAGAAACAAAGTTAAAATTGCATATATAATGTGCTATACGAAGAGAAAGGAAGCTTTCAAGAAGAGGAAGAATTGCATCATGAAGAAGCTTCATGAAATCTGCACCCTCTGTGGAATAGAAGGATGTGCAATAATCTATGAGAATAACAATTCACCAGCAGAGGTTTGGCCATCAGATTCGGATGTCATAAATGTGTTATCCAGGTTTATGAGTTATACTGTGCTGGATCGAAGCAAATATGTGATGGATCAAAGCGACTTCTTGAGGCAAAGCATACGCAAAGCCGAAGAGAAGTTGAAGAAACTAAAGGAGGAAAATAGGAAGAACGAAATGATCAATATCTATTATCATTTTCTTCTGACTAATGAATTTAATGGTAATTTATGGACTAAATATGATCGTGATGATTTTTCGTCTTTTATTGATGGTAATTTGAGGGAAATTGTTCGAAAGATGGAACGAATGCAAATCGAAGCCCAAGAACAAGTCGGAAATATAGGTGAAGCTATGGATGGAACAATGGTGCATGAAAATATTGGTCATGTGCAAGGTCTATTGAATGGTGCAAATTTGGAGGCTAATATGGGTAATATTGCGGCTGATGTCCAAGGTTTGGAGGGTAATATGGGTACTGCTGCTGATGTCCAAGGTTTGGAGGCAAACATGAATTATGGTATGGAAAGTGATTTCCAAGATCTACTTATGGACTTACAACCATTTGATGATATTAATTTGGACACAACTATCTTTGGTCAAACTGGTCCAAATTTCCCTTAA 783 0.3704 MPRNKVKIAYIMCYTKRKEAFKKRKNCIMKKLHEICTLCGIEGCAIIYENNNSPAEVWPSDSDVINVLSRFMSYTVLDRSKYVMDQSDFLRQSIRKAEEKLKKLKEENRKNEMINIYYHFLLTNEFNGNLWTKYDRDDFSSFIDGNLREIVRKMERMQIEAQEQVGNIGEAMDGTMVHENIGHVQGLLNGANLEANMGNIAADVQGLEGNMGTAADVQGLEANMNYGMESDFQDLLMDLQPFDDINLDTTIFGQTGPNFP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00752 260 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Trre6g00752 260 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Trre6g00752 260 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre6g00752 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre6g00752 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre6g00752 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre6g00752 260 Gene3D - 14 116 IPR036879 GO:0003677|GO:0046983
Trre6g00752 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre6g00752 260 Coils Coil 87 114 - -
Trre6g00752 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 54 IPR002100 GO:0003677|GO:0046983
Trre6g00752 260 PANTHER MADS BOX PROTEIN 3 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00752 Trre-Chr6 5855302 5856390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00752 3 155 Type I MADS-box Gene Family AT1G65330 38.562 4.56e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre6g00752 SRF-TF 5.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00752 - - psat:127078338 208.379