Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00751 ATGGACAAAGTTATATCAAATTGGACAATGGAATTTCTCCTTCAAAGTTTCGTTCCCGATTCAATTATTCAAAAAACCCTAACCGTTCTTCCACATTCCGCCGCCGATTCTCGCCTCAAAATAGCACTTCTCCTTCGCACCCTCCAAACTTCCCTTCTCAACGCTTCTCTCTCCGAAACCTCTCTCGAAATCCTCGAACACCTCGAAAATCTTTACCACAACGACGCCATTCCAATATTGGATGCAATGCGCAGTGCTTACTGCGCTGTTGCGGTTGAAAGTACCGTTAAGTATCTCATTACTTGTCCTGAAAGCCCCTCCGGTGAGTACTTTTTTGCTGTTCGACGGATCTGGCGTGAAAGGGTTGATAAATTGTCGGAGGAGGGACGGAGGAGTGATCTTCTGTCTGATGAGTTGGTTCAGTGGGGTCAAGAAGTTGAAGCTGCGCTTTGGGATGCTACGGTTTCGGAGAGGCTTGTGGGGTTGAATACAAGGAGAGATGCGATGAATGAAATGAAGAGGTTTTTGAAGGAAGCGTGGGGAGCTATTGGACTTTCGTATATTGATTCAATGGCGATGATTTCTAACGGGAATGGTTTGCGCCCTGAAGGTGTTTGTGAAATTGCTTCCGGTAGTGAAGTGTCGAAGAAGAGTGATGGAAGGTTAGAAGGTTTGGGAAAGGAGAAAATGAACTCTGTTGGTGATAACGAGAATGAAAACAAGAATGAGAATGTGAAGGATGATGGTGATCATGATAGTGATGTAGCAACAATGAGTGAAAATCATGGCAATGAGCAATTGGAAGACAGAGTTGGTACTTCTTATGATGCAAATCAGGAAGTGGGTGGGTGTGATTCTTCAAAGGGAGATAAAGAATTCCGGAAAGACAATCATAAACTCAAACGCAAGCACTCTGCAATTCGAACATACCATACTGGAGTTAGAATCTCTGGTGCTGAGGAAGCGCCTGAGGAAACGAAAACAACAAATTTGTCGTGTAAATGTGAAAACTTGCCGAGTGCTGAAGTAAGGAAAGTTCGTGAATCCCTTAGATCAAGTTCCATGGAGTTAAAAGCAATGGTCAAGGATCCTCTTCCTGATGCATTGCATGCATCTGACGTTGTAAGATCCAAATTGGCTACAAAAGATATAAATTGCAGGCCACCCATTGAAAATCAGAGTGGACATGTAGATGCACCAGATTCAACTGCATGCAAGACTATTGTACTATATCAGCCTAATGACGTCGTTCCTGGGAACAAGTCTTCTGTTCATGGTAGTAGTAGTCGTCGCCCCAAGCTAATGGAACGGGGAAGTTCTGCTCATACTTTTGAGTGGGATGATTCAATAGAGAACTTACCGCACGTAAGACATCCAAAAAAGAAGAAAAGGAGATGGACTTCATTGGAAGAGGATACCCTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAGCTGGAGTGCAATCCGAGAATATTACAGCAACATATTTGAATTTAGAAGTGCAGGTGATCTGAAGGACAAGTGGAGAAATTTGATTCGGTGA 1545 0.4343 MDKVISNWTMEFLLQSFVPDSIIQKTLTVLPHSAADSRLKIALLLRTLQTSLLNASLSETSLEILEHLENLYHNDAIPILDAMRSAYCAVAVESTVKYLITCPESPSGEYFFAVRRIWRERVDKLSEEGRRSDLLSDELVQWGQEVEAALWDATVSERLVGLNTRRDAMNEMKRFLKEAWGAIGLSYIDSMAMISNGNGLRPEGVCEIASGSEVSKKSDGRLEGLGKEKMNSVGDNENENKNENVKDDGDHDSDVATMSENHGNEQLEDRVGTSYDANQEVGGCDSSKGDKEFRKDNHKLKRKHSAIRTYHTGVRISGAEEAPEETKTTNLSCKCENLPSAEVRKVRESLRSSSMELKAMVKDPLPDALHASDVVRSKLATKDINCRPPIENQSGHVDAPDSTACKTIVLYQPNDVVPGNKSSVHGSSSRRPKLMERGSSAHTFEWDDSIENLPHVRHPKKKKRRWTSLEEDTLRAGVKMFGEGSWSAIREYYSNIFEFRSAGDLKDKWRNLIR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00751 514 Gene3D - 455 514 - -
Trre6g00751 514 CDD SANT_TRF 464 514 - -
Trre6g00751 514 MobiDBLite consensus disorder prediction 214 267 - -
Trre6g00751 514 MobiDBLite consensus disorder prediction 211 267 - -
Trre6g00751 514 SUPERFAMILY Homeodomain-like 460 513 IPR009057 -
Trre6g00751 514 PANTHER MYB TRANSCRIPTION FACTOR 1 514 - -
Trre6g00751 514 SMART sant 462 514 IPR001005 -
Trre6g00751 514 ProSiteProfiles Myb-like domain profile. 458 513 IPR001005 -
Trre6g00751 514 Pfam Myb-like DNA-binding domain 463 512 IPR001005 -
Trre6g00751 514 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 458 514 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00751 Trre-Chr6 5838894 5841913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00751 466 513 Single Myb Histone (SMH) Gene Family AT1G15720 54.167 4.68e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre6g00751 Myb_DNA-binding 9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00751 - K11111 tpra:123916300 829.32