Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00726 ATGGGTTCTGACATTGGTATCGTGAATGGTTCGTGTGTTCATGAATGGAAGAAAGGTTGGCCTCTACGATCTGGTGGATTTGCTCAACTTTGCTTCAAGTGCGGATTTGTGGAGGAATGGAAGTGTGACATCATTGACTCATTATCTGCCTATGAGAATTCAGTTTTCTGTAATAAATTCCACCGTCAACAAACCGGTTGGCGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGTGGATGCATAGTATCTAGATCTATGTTCGAGTATCTTGACTTCGGTGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCAACATAATATGATTCGTAATACTGAAAATCCTAAATGGCCCGTTTCATTGACCCAAAATAATGCAAGGGATACGAATTCTGCTCATTTTGACGGCAGACTGTTTACGAGTAATGTTGACGAAGGAAAGCTTATGCAATTATGCAGAGTCGTTGAAGCTAGTGAATCCATCCATATGAATCATGCTCCGAGAGACAACATTCTTACACCTAACGGGAAAAACAATCAAGAAGTTAAGCCTTCATTCAGGGAAGGGGATACTGGTTTTTCAAATGTGATTAAACCGTCTGTTCAGTCTTTAACTTTTTCTTCATTAGAAAACAATAGACCAATATGGGAGATGAAAAGCATGCACGAATCAAATGCAAAGCCGTCTTTGAATATGTGTTTGGGAAACCCTTCAGGGAACAACTCTTTCCCCCCTTCTTCTGGGGAGAATATAGAAGGAAGACTTGAAGGAAAAGTGTCTCCTACCTTTCATCAAGGGCCGAGATCTCGTCCTATACTGCCCAAACTGTTGAAGACCGGCCTTACCATGAATGGAGGAGAAATTGAAAAAGGGACAACTTCTCAACCACGTATTGCTCGGCCTCCTGGTGATGGGAGGGGCAAAAATCAGTTACTTCCTAGATATTGGCCTAGGATTACGGATCAGGAGCTGGAGCGTTTGTCTGGAGATTTGAAATCCACTGTAGTTCCATTGTTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTTCCTCATATTTCACATTCTGAAGGCCTTCCTTTGCGGGTCCAAGATGTAAAAGGGAATGAATGGACTTTTCAGTTCAGATTTTGGCCTAATAATAACAGCAGGATGTATGTATTGGAGGGTGTCACCCCTTGCATACAGGCCATGGAGTTACGTGCTGGTGATACCGTTACATTTAGTCGGATAGATCCTGGGGGAAAACTTGTTATAGGTTTCAGAAAGTCATCAAATTCCACAGATGCACAGGATGCTTCTCCATCTGCACATTCTAACGGCGTTTCTGCAAAGGGAGCCACCTTTTCTGGTGGAACTGATAATCTTCTATCGAGAAGTAATTGTGGTGATTTTCTCCGTTCACCAAAAGGGAATGGGGAACTTCGCTTAAATGGACATCCTGAATCTCCGCATTTGAGTACTGGAGCTGCTGATTTGAAAACTGAAAATCGTGAGATGACAAACAATAATTCACTAGACCAAAAAATTTCAGCTTTAGAGAAGAAGAGGACTCGAAATATTGGCCTTAAAAGTAAGAGATTGCTTATTGGTAATGATGATTCTATGGAGTTGAGACTTACATGGGATGAAGCGCAGGACTTGCTTCGTCCACCGCCTAGTGTCAAGCCAAGCATTGTCACAATTGAAGACCAAGTATTTGAAGAATACGATGAGCCCCCGGTTTTTGGAAAGAGAACAATATTCAGCGCCTCTTCATCTGGGATGAAGGAACAATGGGCTCAATGCGATGATTGTTCTAAATGGAGAAAGTTGCCAGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCCGAAAATGATTGGGATACAAGCAGATCTTCATGTTCTGCACCAGAGGAGCTGAGCTCAAGGGAATTAGAAAATCTTATGAAAACCAGCAAAGATTTTAAGAAGCGACGGATTGTAGAAAACAGCAAGTTGATCCAAGAACATGAGCCTTCTGGCTTAGACGCTCTCGCCAGTTTAGCTGTGTTAGGAGAAAATCTCATTGACCCTACTGATTCGTCAGCTGGAGCCACCACTAAACATCCTAGACACCGTCCGGGCTGCTCTTGTATTGTGTGCATTCAGCCCCCAAGCGGAAAAGGAAGACACAAGCCAACATGTACTTGCAATGTGTGCACGACCGTGAAGCGTCGGTTCAAAACTCTTATGCTACGCAAGAAGAAACGCCAGTCGGAGCGCGAAGCAGATGCCGCTGCCAAGAAAGATCAAATTCGCAAAAGAGACGACAATTTAGATACCATCGGCGGAGCATCAAGAGATGATGCAAATCCTTTGGAAAAAGAGGGAGGTTTAAATAGAAGTCAAACCGAGGTTGGCGAGTCCAGTGCTGGAAAGATAGATCTGAATAGTGATCCAAACCGCGAAGAATCACAATTGGATAATATCGCAAAACTTCGTCGTCAACTATCGGAACGAATGAATATGAACCAAAATGGTGGTTTAAGAACCATTAATACTGAAGTGCAGGAAGGTCAGCAGCATTCTTCTTTGGTCACTCAATCTAATGGTGAAGATAAGAGAAACTTGTCTGATGAAAGATGCATTGCATCCATTATCTTGAACAAAGAAAGAAGAGATGAAGTATACAGTCAATCAAATGAAAATCAAAACAATCTGTCTTAA 2739 0.4268 MGSDIGIVNGSCVHEWKKGWPLRSGGFAQLCFKCGFVEEWKCDIIDSLSAYENSVFCNKFHRQQTGWRECNFCNKPIHCGCIVSRSMFEYLDFGGIGCVSCVNTSQHNMIRNTENPKWPVSLTQNNARDTNSAHFDGRLFTSNVDEGKLMQLCRVVEASESIHMNHAPRDNILTPNGKNNQEVKPSFREGDTGFSNVIKPSVQSLTFSSLENNRPIWEMKSMHESNAKPSLNMCLGNPSGNNSFPPSSGENIEGRLEGKVSPTFHQGPRSRPILPKLLKTGLTMNGGEIEKGTTSQPRIARPPGDGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMELRAGDTVTFSRIDPGGKLVIGFRKSSNSTDAQDASPSAHSNGVSAKGATFSGGTDNLLSRSNCGDFLRSPKGNGELRLNGHPESPHLSTGAADLKTENREMTNNNSLDQKISALEKKRTRNIGLKSKRLLIGNDDSMELRLTWDEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSASSSGMKEQWAQCDDCSKWRKLPVDALLPPKWTCSENDWDTSRSSCSAPEELSSRELENLMKTSKDFKKRRIVENSKLIQEHEPSGLDALASLAVLGENLIDPTDSSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCTTVKRRFKTLMLRKKKRQSEREADAAAKKDQIRKRDDNLDTIGGASRDDANPLEKEGGLNRSQTEVGESSAGKIDLNSDPNREESQLDNIAKLRRQLSERMNMNQNGGLRTINTEVQEGQQHSSLVTQSNGEDKRNLSDERCIASIILNKERRDEVYSQSNENQNNLS 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00726 912 ProSiteProfiles Zinc finger CW-type profile. 603 653 IPR011124 GO:0008270
Trre6g00726 912 MobiDBLite consensus disorder prediction 860 880 - -
Trre6g00726 912 CDD B3_DNA 338 439 IPR003340 GO:0003677
Trre6g00726 912 Gene3D - 318 445 IPR015300 -
Trre6g00726 912 SMART B3_2 340 441 IPR003340 GO:0003677
Trre6g00726 912 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 8 863 - -
Trre6g00726 912 ProSiteProfiles B3 DNA-binding domain profile. 340 441 IPR003340 GO:0003677
Trre6g00726 912 Pfam CW-type Zinc Finger 608 650 IPR011124 GO:0008270
Trre6g00726 912 MobiDBLite consensus disorder prediction 284 312 - -
Trre6g00726 912 MobiDBLite consensus disorder prediction 806 820 - -
Trre6g00726 912 MobiDBLite consensus disorder prediction 755 831 - -
Trre6g00726 912 MobiDBLite consensus disorder prediction 442 466 - -
Trre6g00726 912 Gene3D - 598 652 - -
Trre6g00726 912 MobiDBLite consensus disorder prediction 860 876 - -
Trre6g00726 912 FunFam B3 domain-containing transcription repressor VAL1 318 445 - -
Trre6g00726 912 Pfam B3 DNA binding domain 340 440 IPR003340 GO:0003677
Trre6g00726 912 SUPERFAMILY DNA-binding pseudobarrel domain 338 441 IPR015300 -
Trre6g00726 912 MobiDBLite consensus disorder prediction 759 799 - -
Trre6g00726 912 MobiDBLite consensus disorder prediction 484 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00726 Trre-Chr6 5714116 5720652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00726 1 836 B3 DNA Binding Superfamily AT2G30470 47.929 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre6g00726 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00726 K09287 - gmx:100789848 1358.2