Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00720 ATGTCGTATGTCCCTCCACACTTGAGAAACGCCAGTTCAACCACCACCACCACTACCGCCGCCGCAACTAAACCTTCATCAACCGGAACCCTAGACAACAACCACCACCATCATCATCATCATAACAACAACAACCTCGCATTCTCAAACTCACACTCCAATACTCCTTCTCTCTTCAATGCCTCTCGCCGTACCTCCGCCGCTCCTCCGCAGTCGCGGATTACCGCCGTTCCTGATACTGTTTTCCCTAACTGGCAACCTTCTGAACGTGTTTCTCGCATGAACCCTGACCTGATTGAAGAGGTTCGCTTACGGCTTAATCTAGATGTTACTGTTTCATCCGACTCTCCTGCTGCACCTGGACCTATAGAATCGTTTAATGATATGTGTTTGAATCCAAGTATCATGAAGGACATTGCTTATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCTATTGCTCTTAGTGGAAGGGATCTTCTGGGTTGTGCTGAAACTGGTAGTGGGAAGACTGCAGCTTTCACGATTCCTATGATACAGCATTGCTTGGCCCAGCCTCCAATTCGGCGAGGAGATGGTCCCCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTCCAAGCTTTTAGCATATCTCTCGAGTCATTAAAAACTGCCATAGTTGTAGGTGGTACTAACATTGAAAAGCAGAGGTCAGAACTAAGAGCAGGAGTTGAAATAGCAGTTGCCACCCCTGGGAGATTCATTGACCACTTACAACAAGGCAACACTTCTCTCTCAAGAATTTCTTATGTTGTTCTAGACGAGGCTGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGGGAGATAATGAGAAGTCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCAACTATGCCTGTGGAGATTGAAGCATTAGCAAATGAGTACTTAACTAACCCCGTGCAAGTTAAGGTGGGAAAAGTGAGCAGTCCAACAACTAATGTTTCACAAACTCTTGTAAAGGTTTCTGAAAGTGAGAAGATTGATCGACTCTTAGATTTGCTTGTAGAGGAGGCATCACAAGCTGAAAAGTGTGGTCATCCATTTCCGTTGACAATTGTGTTTGTTGAGAGAAAGACAAGGTGTGATGAAGTTGCTGAAGCATTGGTTGCTCAAGGATTATCTGCAGTTTCACTGCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCTTTGCATAACTTTCGGAGTAGCTCAACCAGCATTTTGGTTGCCACGGATGTTGCATCTCGGGGTTTGGATGTCACAGGAGTGTCACACGTCATAAATCTTGATCTTCCAAAGACCACAGAAGATTATATACACCGGATTGGAAGGACGGGGCGAGCAGGATCAACCGGCATAGCCACTTCCTTTTACACAGATCGTGACATGTTCCTTGTGACAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAACGCTGTGGCATTCGCTACTGGAAAGGTTGCCAGAAGAAAGGAGAAAGAAGCAGCAGCTGCACACAAAGAGGCAAGCATTGCTTTATCTAGACACCTTGGATCAGGAGCAGCTTCAATTAACATCGAAGATAAGTATAGATTCATGATTACTGCCCCAAACAGTAAAAAAGAGGGCGCAGCAGATAGTGCATGGGATGATTGA 1710 0.4538 MSYVPPHLRNASSTTTTTTAAATKPSSTGTLDNNHHHHHHHNNNNLAFSNSHSNTPSLFNASRRTSAAPPQSRITAVPDTVFPNWQPSERVSRMNPDLIEEVRLRLNLDVTVSSDSPAAPGPIESFNDMCLNPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSISLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVEIEALANEYLTNPVQVKVGKVSSPTTNVSQTLVKVSESEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHNFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEASIALSRHLGSGAASINIEDKYRFMITAPNSKKEGAADSAWDD 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00720 569 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 277 285 IPR000629 -
Trre6g00720 569 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 355 513 IPR001650 -
Trre6g00720 569 SMART ultradead3 143 346 IPR014001 -
Trre6g00720 569 Coils Coil 210 230 - -
Trre6g00720 569 Gene3D - 337 529 IPR027417 -
Trre6g00720 569 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 331 IPR014001 -
Trre6g00720 569 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 113 524 - -
Trre6g00720 569 SMART helicmild6 391 472 IPR001650 -
Trre6g00720 569 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 124 152 IPR014014 GO:0003724
Trre6g00720 569 CDD DEADc 135 332 - -
Trre6g00720 569 CDD SF2_C_DEAD 343 481 - -
Trre6g00720 569 MobiDBLite consensus disorder prediction 1 88 - -
Trre6g00720 569 Gene3D - 86 335 IPR027417 -
Trre6g00720 569 MobiDBLite consensus disorder prediction 44 88 - -
Trre6g00720 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 492 IPR027417 -
Trre6g00720 569 MobiDBLite consensus disorder prediction 1 30 - -
Trre6g00720 569 FunFam probable ATP-dependent RNA helicase DDX17 84 334 - -
Trre6g00720 569 Pfam DEAD/DEAH box helicase 148 318 IPR011545 GO:0003676|GO:0005524
Trre6g00720 569 Pfam Helicase conserved C-terminal domain 355 472 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00720 Trre-Chr6 5655507 5662735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00720 122 494 Eukaryotic Initiation Factors Gene Family AT3G19760 35.372 9.40e-70 228