Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00716 ATGGCAGATGAAGCACAAATTGATGTGAAGGAGGAGGTTCCTGATATTGCACCATTTGATCCTACTAAAAAGAAGAAGAAAAAGAAACCCACAGTCGTAGATCTTGATGATGATTCAGTAGACAAGTTGGCTGAAAAGACAGAAAATCTGTCCGTTTCTGAGGGGTTTGACAGTACATTAGCTGGTGCGAAAAAGAAGAAGAAGAAGCAGGTTGATATCAGTAACTTAATTGATGAGAGTGCTGATGCGAAAAATGAAGATTTGGATGATCTCGCTGAAGAAGATGACCAAGATGCTGTTTCGTTGCAACCTCGTTACCCTTGGGAAGGGAGTGATCGTGATTATCAATACGAGGAGCTTTTGGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTTGCTGGAGACCGGAGGAGAACTGTTATGAGGCCTCCACAAGTGCTTCGTGAGGGCACAAAGAAGACTGTATTTGTGAATTTTATGGACCTTTGCAAAACGATGCATCGGCAGCCAGACCATGTCATGGCTTTCTTGCTTGCTGAGTTGGGTACAAGTGGTTCTCTAGATGGACAGCAGAGATTGGTTGTGAAGGGAAGATTTGCACCAAAGAATTTTGAAGGAATTTTGCGTCGATATGTCAATGAATATGTCATTTGCCTTGGATGCAAAAGTCCTGACACAATACTTTCTAAGGAGAACCGTTTGTTTTTTCTCCGCTGTGAAAAGTGTGGATCAGGAAGATCAGTTGCACAAATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGTAGGACTGCAGGAGGGACATGA 813 0.4317 MADEAQIDVKEEVPDIAPFDPTKKKKKKKPTVVDLDDDSVDKLAEKTENLSVSEGFDSTLAGAKKKKKKQVDISNLIDESADAKNEDLDDLAEEDDQDAVSLQPRYPWEGSDRDYQYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAQIKAGFVARVGRRTAGGT 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00716 270 Pfam Domain found in IF2B/IF5 138 247 IPR002735 GO:0003743|GO:0006413
Trre6g00716 270 Gene3D - 112 254 - -
Trre6g00716 270 SMART eIF2Bneu4 139 248 IPR002735 GO:0003743|GO:0006413
Trre6g00716 270 MobiDBLite consensus disorder prediction 1 48 - -
Trre6g00716 270 Coils Coil 66 86 - -
Trre6g00716 270 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 118 267 IPR045196 GO:0003743|GO:0006413
Trre6g00716 270 MobiDBLite consensus disorder prediction 88 108 - -
Trre6g00716 270 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 114 221 IPR016189 GO:0003743|GO:0006413
Trre6g00716 270 FunFam Eukaryotic translation initiation factor 2 subunit 112 254 - -
Trre6g00716 270 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 218 253 IPR016190 GO:0003743|GO:0006413
Trre6g00716 270 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00716 Trre-Chr6 5639644 5642575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00716 1 265 Eukaryotic Initiation Factors Gene Family AT5G20920 72.761 8.39e-130 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00716 K03238 - qsu:112040731 425.246