Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00713 ATGATCCCACAACAAGAATCTGAGTTTGATATCGGTTATCTCAAACCATATTACGGAAAGCTGTTTCCTTATGCTGATATGTTTAAATGGATGTCTTACGGCCATGATGGGAAACATCCTGGTTGTGATCAGTCCTACTTTGGAAGGAGGGAATTTTCCTTCACTCTGAAAGGTGATTTTTATCTGCGCTTCCAATCTTTCAACAGTGCACTTGAGCTCGAAAACTCCATCAAAGAAAAATGCCCTTTAAAGATTGACATTGGACCTGTCTACACTGTCGATCCTGCAAAAAGGCATGCCTATGCACAGGGTGATAATAAAGTCTTCACTCCAGTAGAGAGGGAGTTGATTTTTGATATAGATATGACAGATTATGATGATGTTAGATACTGCTGCAAGGGTGCTGATGTTTGCTTGGATTGCTGGCCATTGATGACCATAGCCATCAAAGTGATTGATGCTTCCTTAAGAGATGACTTTGGTTTTAAGCACATACTCTGGGTCTATAGTGGACGCAGAGGTGTTCATTGTTGGGTGTGTGATGGGAAGGCAAGAAGGTTGACTAATGAGCAAAGAGCTTCTATTGCTGACTATTTTCGTGTTTACAAGGGCAATGAAAATAGTCATAAGAAGGTTTCCTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCGACATCATACACCAACGTTCTCAAAGATTATTTTGAGAAAATATTGCTTACAAATCAAAACTTACTTGCTACTGAGGAGAGATATGAGAAGATCCTAAGCATGATTCCTGATGAATCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAATAATAGGAGGTCCTCTAGCGCAAAAGAAGATATTAATGTTGTGCGATGGGAACAGTGCAAGCAGTTGCTGCAATCTGGAAAACATAAGGCACAAGGGTTGCGTAGATGTGTGGAAGAGATTGTGTTCTTCTTTACTTACCCCAGGCTAGATATGGAGGTTTCAAAACATATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCAAAAACAGGTCGTGTTTGTGTCCCTATTGATCCAAATCGGTGTGACGAGTTTGATCCTACTACAGTACCCACCCTTTTCCAGCTTCTAGAAGAGCTTAATAATGAAGGCTTGAGAGCTGATGTTAATGGTGAATGGAGTGGAACTTCGCTTGGAAGTGCCATCACGCTTTTCAGATCGTCATTCTTAGAACCTTTGTTAAAAGCCAGCAAGGAGGAGATAGAGAGATCCTATAGTTTAAAGTTGCAGCAGTCGAAGAACTCCATAGGTTGGTAA 1305 0.4092 MIPQQESEFDIGYLKPYYGKLFPYADMFKWMSYGHDGKHPGCDQSYFGRREFSFTLKGDFYLRFQSFNSALELENSIKEKCPLKIDIGPVYTVDPAKRHAYAQGDNKVFTPVERELIFDIDMTDYDDVRYCCKGADVCLDCWPLMTIAIKVIDASLRDDFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRASIADYFRVYKGNENSHKKVSLMGAALHPFLATSYTNVLKDYFEKILLTNQNLLATEERYEKILSMIPDESIASELRGRWQDNNRRSSSAKEDINVVRWEQCKQLLQSGKHKAQGLRRCVEEIVFFFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCDEFDPTTVPTLFQLLEELNNEGLRADVNGEWSGTSLGSAITLFRSSFLEPLLKASKEEIERSYSLKLQQSKNSIGW 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00713 434 Pfam DNA primase small subunit 118 354 IPR002755 GO:0003896|GO:0006269
Trre6g00713 434 Gene3D DNA primase, PRIM domain 2 415 - -
Trre6g00713 434 PANTHER DNA PRIMASE SMALL SUBUNIT 6 419 - -
Trre6g00713 434 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 15 371 IPR014052 GO:0003896|GO:0006269
Trre6g00713 434 SUPERFAMILY Prim-pol domain 9 378 - -
Trre6g00713 434 CDD AE_Prim_S 38 363 IPR014052 GO:0003896|GO:0006269
Trre6g00713 434 FunFam DNA primase 1 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00713 Trre-Chr6 5618560 5623867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00713 3 434 Core DNA Replication Machinery Family AT5G41880 67.206 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00713 K02684 - gmx:100780574 784.637