Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00708 ATGAATCTTTCAAAGGGTTGTTGCAAGAATGAAATTGTTTTCATCATCTTATGGTTCTGCTGCCATTTGATACCGGCTGCTGCGCAAGTTATCAATGTCACGGACCCTACTGAAGTGCTAGCATTGAGGAACATACATGGAAGTTTGATTGATCCAAATGGACATTTGAGCAATTGGAATAGTGATGGAGACCCATGCCTATCTAACTGGACAGGAGTTGTGTGTTCTAATCAAACAATTGAAGAAAACTTTCTACATGTTGTAGAATTGGAACTACTGAGATTGAACTTGTCTGGAAAATTGGCACCGGATATTGGCAACTTAGCTTATTTGAAAATACTAGATTTCATGTGGAACAACATAAGTGGGGGAATTCCAGTGGAAATTGGTAATATCAAATCTTTGGAACTAATATTCCTAAGTGGAAATGAATTAACAGGACCAGTGCCAGAGGAACTTGGCTTTCTTCCAAACCTACGAATAATGCAAATTGATGATAACAAATTATCAGGACCTATACCTTTATCATTTGCAAATTTGAACAAAACAAAGCACTTTCACATGAACAATAATTCCCTTAGCGGGCAAATTCCAGCAGAATTTTCCAAATTACCAAACCTTATTCATCTGCTTCTCGACAACAATAACTTGTCAGGAATTCTTCCACCTGAGCTATCCAAAATGCCAAACTTGACTATACTCCAACTCGACAACAATAACTTTGGCGGAAATAGGATTCCAGATACTTATGCCAACATGACAAAACTGGTGAAGTTGAGCCTTCGGAATTGCAACCTGCAAGGACCGATTCCTGATTTAAGCCAGATACCGCACCTCCTTTATATTGACCTCAGCTTCAATCAGTTGAATGAATCAATTCCTCCTAATAAGCTTGGTGAAAATATCACGACCATTATTTTATCGAACAACAATCTTACTGGAACTATTCCATCCAATTTTTCTCGTCTTCCACGTCTCCAGAAATTGTCGCTTGCAAACAATTTATTGAGAGGGAGTGTTCCTTCCACAATTTGGCAGAACAAGATTTCAAATGCTGCAGAAAGATTGCAATTAGAATTGCAAAATAACCAATTTATAAGCATATCAGGCAGTACTAACCTTCCACCAAATGTTACACTCTTGCTCGATGGGAATCCCTTATGCTCAGATAACACACTGAATCAGTTCTGTAAAGTTGAAGGAGCTAGAATTGAAACAAAAGGCACATCTCCAACAAACTTCAGTGACTCTTGTCCGAATCAAAGATGTCCACCTCCTTATGAATTCTATGTGGATTGTTTCTGCGTGGCTCCATTGATTATTGGCTATCGATTGAGAAGTCCTGGTTTTTCAGATTTTCCGCCATATTTCAATGCATTTGAGCAATACTTGACTTCAAATCTTAAGTTACAAGCCAATCAGATAAGCTATACTTTTGAGTGGCAAGTAGGACCTCGAATTTTAATGATCTTGAAGATTTTTCCTGAATATGTTGATAAAAATAGTTCTCACAAATTCAATTCAAGTGAGATTCAACGGATCAGAAACATGTTCACTGGATGGACCATTCCTAATCGTGATTTATTTGGGCCTTATGATCTGATGGACCTGCCTCCGTATAATAATGGGACCAACACTTCTTCAAAATCAGACATAAGCACGGGTGCTTTGGTTGGCATAATCTTAGGCTCAATTGCGTGTGTAATATCGTTGTCTGCTGTTTTCATTCTTTTAATATTAAGAGTAAGATTAAGACGTCATGACGCAGTTTCCAAGCCACGTCATTCATCTAAGATCTCGATACAAATTGATGGCACAAGAGCCTTTACTTATGAAGAGTTGTCCGTTGCTACAAACAATTTTGACAGCAATGCTCAAATTGGACAAGGAGGCTATGGGAAGGTTTATAAAGGTATTCTTTCTAATGGCACTGTCGTAGCCATAAAGCGTGCACAGCAAGCATCACTGCAAGTTGGATACTGTGACGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCAAATGGCACACTAAGAGACCACCTTTCTGTTACATCAGAAAAGCCTTTGACTTTTGCTATGAGATTGAAGATAGCATTAGAATCAGCTAAAGATTTTGGACTTTCACGGCTTGCCCCAGTTCCAGATGTTCAAGGAATTATACCTGGTCATGTATCCACAGTAGTAAAAGGGACCCCGGGTTACCTTGATCCGGAGTACTTCTTAACTCACACGTTAACCGACAAGAGTGATGTTTACAGTCTTGGTGTTGTATTTCTTGAACTTTTGACTGGGATGCACCCTATTTCACATGGCAAAAATATTGTTAGAGAGGTTAATGTTGCGTACGAATCGGGTGAGATTTCTTCAGTTATTGATGAACACATGGGGTCTTATCCATCTGATCATGCTGAGAAGTTTTTAAATTTGGCCCTAAAGTGTTCCGAAGACGAACCAGAACCACGTCCTAAAATGGCAGTAGTGGTTAGAGAGCTTGAAAACATTTGTTCTATGATGTCCGATTCAGATACCACGAGAGGTACATCTACAAGCACCGATTCTCGCAAAACAGTCAGCTTTCTAGGCAGTACACCTTCTTCATCCTCAGTCATAAAGATTTCTTCTGTATCAAGAAATGTATAA 2646 0.3893 MNLSKGCCKNEIVFIILWFCCHLIPAAAQVINVTDPTEVLALRNIHGSLIDPNGHLSNWNSDGDPCLSNWTGVVCSNQTIEENFLHVVELELLRLNLSGKLAPDIGNLAYLKILDFMWNNISGGIPVEIGNIKSLELIFLSGNELTGPVPEELGFLPNLRIMQIDDNKLSGPIPLSFANLNKTKHFHMNNNSLSGQIPAEFSKLPNLIHLLLDNNNLSGILPPELSKMPNLTILQLDNNNFGGNRIPDTYANMTKLVKLSLRNCNLQGPIPDLSQIPHLLYIDLSFNQLNESIPPNKLGENITTIILSNNNLTGTIPSNFSRLPRLQKLSLANNLLRGSVPSTIWQNKISNAAERLQLELQNNQFISISGSTNLPPNVTLLLDGNPLCSDNTLNQFCKVEGARIETKGTSPTNFSDSCPNQRCPPPYEFYVDCFCVAPLIIGYRLRSPGFSDFPPYFNAFEQYLTSNLKLQANQISYTFEWQVGPRILMILKIFPEYVDKNSSHKFNSSEIQRIRNMFTGWTIPNRDLFGPYDLMDLPPYNNGTNTSSKSDISTGALVGIILGSIACVISLSAVFILLILRVRLRRHDAVSKPRHSSKISIQIDGTRAFTYEELSVATNNFDSNAQIGQGGYGKVYKGILSNGTVVAIKRAQQASLQVGYCDEEGEQMLVYEFMSNGTLRDHLSVTSEKPLTFAMRLKIALESAKDFGLSRLAPVPDVQGIIPGHVSTVVKGTPGYLDPEYFLTHTLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNVAYESGEISSVIDEHMGSYPSDHAEKFLNLALKCSEDEPEPRPKMAVVVRELENICSMMSDSDTTRGTSTSTDSRKTVSFLGSTPSSSSVIKISSVSRNV 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00708 881 SUPERFAMILY Protein kinase-like (PK-like) 606 848 IPR011009 -
Trre6g00708 881 Gene3D Ribonuclease Inhibitor 300 391 IPR032675 -
Trre6g00708 881 Gene3D Transferase(Phosphotransferase) domain 1 706 858 - -
Trre6g00708 881 MobiDBLite consensus disorder prediction 841 881 - -
Trre6g00708 881 Gene3D Ribonuclease Inhibitor 36 190 IPR032675 -
Trre6g00708 881 SUPERFAMILY L domain-like 64 400 - -
Trre6g00708 881 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 36 198 - -
Trre6g00708 881 Pfam Leucine rich repeat 157 217 IPR001611 GO:0005515
Trre6g00708 881 Pfam Leucine rich repeat 301 345 IPR001611 GO:0005515
Trre6g00708 881 Gene3D Phosphorylase Kinase; domain 1 591 656 - -
Trre6g00708 881 Pfam Protein kinase domain 706 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00708 881 Gene3D Transferase(Phosphotransferase) domain 1 657 705 - -
Trre6g00708 881 ProSitePatterns Protein kinases ATP-binding region signature. 627 649 IPR017441 GO:0005524
Trre6g00708 881 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Trre6g00708 881 ProSiteProfiles Protein kinase domain profile. 442 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g00708 881 Gene3D Ribonuclease Inhibitor 191 299 IPR032675 -
Trre6g00708 881 PANTHER RECEPTOR-LIKE PROTEIN 55 47 705 - -
Trre6g00708 881 SMART LRR_typ_2 323 347 IPR003591 -
Trre6g00708 881 SMART LRR_typ_2 204 227 IPR003591 -
Trre6g00708 881 SMART LRR_typ_2 228 252 IPR003591 -
Trre6g00708 881 SMART LRR_typ_2 276 301 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00708 Trre-Chr6 5556041 5563143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00708 20 845 Receptor kinase-like Gene Family AT5G01950 49.442 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trre6g00708 Pkinase 1.4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00708 - - gmx:100786467 1157.13